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View Structure Prediction Details

Protein: SSBP_ARATH
Organism: Arabidopsis thaliana
Length: 201 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SSBP_ARATH.

Description E-value Query
Range
Subject
Range
gi|30410826 - gi|30410826|ref|NP_660857.2| single-strand binding protein [Buchnera aphidicola str. Sg (Schizaphis ...
183.0 [0..66] [189..15]

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Predicted Domain #1
Region A:
Residues: [1-201]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSLAIRVSK VLRSSSISPL AISAERGSKS WFSTGPIDEG VEEDFEENVT ERPELQPHGV  60
   61 DPRKGWGFRG VHRAIICGKV GQAPLQKILR NGRTVTIFTV GTGGMFDQRL VGATNQPKPA 120
  121 QWHRIAVHNE VLGSYAVQKL AKNSSVYVEG DIETRVYNDS ISSEVKSIPE ICVRRDGKIR 180
  181 MIKYGESISK ISFDELKEGL I

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 43.39794
Match: 1kawA
Description: ssDNA-binding protein
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.141433535514844 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle