| Protein: | SNP29_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 251 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SNP29_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
173.0 | [0..51] | [230..8] |
|
Region A: Residues: [1-251] |
1 11 21 31 41 51
| | | | | |
1 MAPKNSSWNP FDDEKEAAKS FSLNPFDDDD DDKEVEKRFT SSLKPSGGKE NQTVQELESY 60
61 AVYNSEETTK TVQGCLKVAE EIRCDASKTL VMLNEQGDQI TRTHQKTVDL DHHLSRGEKI 120
121 LGRLGGVFSR TWKPKKSRSI TGPVITKGDS PKRKVIDLKT REKLGLNPSL KPKSKTLPEA 180
181 VDAYQKTQIA KQDEALTDLS ALLGELKNMA VDMGTAIERQ TNELDHLQDN ADELNYRVKQ 240
241 SNQRARYLLR K
|
| Detection Method: |  |
| Confidence: | 28.045757 |
| Match: | 1dn1B |
| Description: | Syntaxin 1A N-terminal domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| SNAP receptor activity | 3.50393203740159 | bayes_pls_golite062009 |
| binding | 2.13344290488739 | bayes_pls_golite062009 |
| SNARE binding | 1.85060343142976 | bayes_pls_golite062009 |
| transporter activity | 1.74189664015129 | bayes_pls_golite062009 |
| protein binding | 1.51700626946713 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 1.2360389745429 | bayes_pls_golite062009 |
| transmembrane transporter activity | 1.13101548288086 | bayes_pls_golite062009 |
| protein transporter activity | 0.81087535212264 | bayes_pls_golite062009 |
| substrate-specific transmembrane transporter activity | 0.398018181744571 | bayes_pls_golite062009 |
| extracellular ligand-gated ion channel activity | 0.27873535382283 | bayes_pls_golite062009 |
| excitatory extracellular ligand-gated ion channel activity | 0.27873535382283 | bayes_pls_golite062009 |
| ion transmembrane transporter activity | 0.0981818568206971 | bayes_pls_golite062009 |
| phospholipid binding | 0.0172309833091902 | bayes_pls_golite062009 |
