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View Structure Prediction Details

Protein: SIP12_ARATH
Organism: Arabidopsis thaliana
Length: 243 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SIP12_ARATH.

Description E-value Query
Range
Subject
Range
gi|255646628 - gi|255646628|gb|ACU23788.1| unknown [Glycine max]
PIP27_MAIZE - Aquaporin PIP2-7 OS=Zea mays GN=PIP2-7 PE=2 SV=1
224.0 [0..2] [238..37]

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Predicted Domain #1
Region A:
Residues: [1-243]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAVKSALGD MVITFLWVIL SATFGIQTAA IVSAVGFHGI TWAPLVISTL VVFVSISIFT  60
   61 VIGNVLGGAS FNPCGNAAFY TAGVSSDSLF SLAIRSPAQA IGAAGGAITI MEMIPEKYKT 120
  121 RIGGKPSLQF GAHNGAISEV VLSFSVTFLV LLIILRGPRK LLAKTFLLAL ATVSVFVVGS 180
  181 KFTRPFMNPA IAFGWAYIYK SHNTWDHFYV YWISSYTGAI LSAMLFRIIF PAPPLVQKKQ 240
  241 KKA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 54.522879
Match: 2b5fA
Description: Crystal structure of the spinach aquaporin SoPIP2;1 in an open conformation to 3.9 resolution
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle