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View Structure Prediction Details

Protein: EXOC6_ARATH, SC1...
Organism: Arabidopsis thaliana
Length: 789 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for EXOC6_ARATH, SC1....

Description E-value Query
Range
Subject
Range
gi|114578125 - gi|114578125|ref|XP_515544.2| PREDICTED: hypothetical protein [Pan troglodytes]
812.0 [0..6] [788..236]

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Predicted Domain #1
Region A:
Residues: [1-369]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEAKPKRRIV TENGDTGEDL VLATLIGNGD DVGPLVRHAF EMGRPEPLVH QLKNVARKKE  60
   61 AEIEDLCKTH YEEFIVAVDE LRGVLVDAEE LKSDLASDNF RLQEVGSALL VKLEELLESY 120
  121 AVKKNVTEAI KMSKICVQAL ELCVKCNSYI SEGQFYHALK TMDLIEKSYL KLIPLKVLKL 180
  181 VIERRIPVIK THIEKKVCSQ FNEWLVHIRS SSKNIGQTAI GLTASARQRE EEMLERQRRA 240
  241 EEQNTGGLGE LAYTLDVEDS EQDSVLKFDL TPLYRAYHIH TILGVPERFR DYYYENRLLQ 300
  301 LQSDLQITYT QPFVESYQTF LAQVAGYFIV EDRVIRTAGD FLLADQVETM WETAISKIVA 360
  361 ILENQFARM

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 12.39794
Match: 1i84S
Description: Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [370-789]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DSPTHLLLVK DYVTLLGTTL RQYGYEVGPV LDALDKSRDK YHELLLEECR KQIVTAITED  60
   61 TYQQMVIKKE ADYENNVLSF NLQTSDIMPA FTYIAPFSSM VPDVCRIIRS YIKGSVDYLS 120
  121 YGVNTNFFSV LRKYLDKILI DVLNEVILET ISNNSIGVSQ AMQIAANISF LEKASDYFLR 180
  181 HAAQLCGIPS RSVERPQASL AAKVVLKTSR DAAYLALLNV VNTKLDEFMK LTENVNWTTE 240
  241 EMPQGPHEYI NEVVIYLETV MSTAQQILPM DALYKVGVGA IEHISNSIVS TFLSDSIKRF 300
  301 NANAVSAINH DLRVIENFAD ERYHSSGLNE IYKEGSFRSY LVEARQLINL LSSSQPENFM 360
  361 NPVIRERNYN TLDYKKVATI CEKFKDSADG IFGSLANRNT KLTAKKKSMD MLKKRLKEFN 420
  421 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 91.09691
Match: 2a2fX
Description: Crystal Structure of Sec15 C-terminal domain
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle