YRC Public Data Repository - Protein Structure Prediction

Protein:	RUB1_ARATH
Organism:	Arabidopsis thaliana
Length:	80 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RUB1_ARATH.

Description	E-value	Query Range	Subject Range
gi\|50756309 - gi\|50756309\|ref\|XP_415105.1\| PREDICTED: similar to polyubiquitin with 3 Ub domains [Gallus gallus]	141.0	[0..2]	[80..172]
gi\|567767 - gi\|567767\|gb\|AAA53067.1\| p125 protein	138.0	[0..2]	[80..348]
gi\|114577583 - gi\|114577583\|ref\|XP_001147989.1\| PREDICTED: similar to RPS27A protein [Pan troglodytes]	137.0	[0..2]	[77..81]
gi\|73970166 - gi\|73970166\|ref\|XP_531829.2\| PREDICTED: similar to ubiquitin and ribosomal protein S27a precursor [C...	137.0	[0..2]	[77..74]
gi\|5523979 - gi\|5523979\|gb\|AAD44042.1\|AF104025_1 polyprotein [Bovine viral diarrhea virus genotype 2]	137.0	[0..2]	[80..225]
gi\|73586974 - gi\|73586974\|gb\|AAI02492.1\| RPS27A protein [Bos taurus]	136.0	[0..2]	[77..27]
gi\|113578271, gi... - gi\|115462241\|ref\|NP_001054720.1\| Os05g0160200 [Oryza sativa (japonica cultivar-group)], gi\|113578271...	134.0	[0..2]	[77..24]

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Predicted Domain #1

Region A:
Residues: [1-80]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TMIKVKTLTG KEIEIDIEPT DTIDRIKERV EEKEGIPPVQ QRLIYAGKQL ADDKTAKDYN  60
   61 IEGGSVLHLV LALRGGFGLL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	30.69897
Match:	2ojrA
Description:	No description for 2ojrA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits