YRC Public Data Repository - Protein Structure Prediction

Protein:	RT10_ARATH
Organism:	Arabidopsis thaliana
Length:	241 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RT10_ARATH.

Description	E-value	Query Range	Subject Range
gi\|21536735 - gi\|21536735\|gb\|AAM61067.1\| putative 40S ribosomal protein S10 [Arabidopsis thaliana]	276.0	[0..1]	[241..1]
gi\|11177520 - gi\|11177520\|gb\|AAG32316.1\| ribosomal protein S10 [Daucus carota]	185.0	[0..1]	[236..1]
gi\|40738639, gi\|... - gi\|67540638\|ref\|XP_664093.1\| hypothetical protein AN6489.2 [Aspergillus nidulans FGSC A4], ref\|XP_41... RT10_EMENI - 30S ribosomal protein S10, mitochondrial OS=Emericella nidulans GN=rsm10 PE=3 SV=1	160.0	[0..36]	[231..22]
gi\|48871257 - gi\|48871257\|ref\|ZP_00323973.1\| COG0051: Ribosomal protein S10 [Pediococcus pentosaceus ATCC 25745]	151.0	[0..120]	[216..36]
RS10_BLOFL - 30S ribosomal protein S10 OS=Blochmannia floridanus GN=rpsJ PE=3 SV=1	148.0	[0..125]	[216..1]
gi\|52426104, gi\|... - gi\|52426104\|ref\|YP_089241.1\| 30S ribosomal protein S10 [Mannheimia succiniciproducens MBEL55E], gi\|5...	148.0	[0..125]	[216..20]
RS10_BRASO - 30S ribosomal protein S10 OS=Bradyrhizobium sp. (strain ORS278) GN=rpsJ PE=3 SV=1 RS10_BRASB - 30S ribosomal protein S10 OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=rpsJ PE=3 SV=1 RS10_RHOPT - 30S ribosomal protein S10 OS=Rhodopseudomonas palustris (strain TIE-1) GN=rpsJ PE=3 SV=1 RS10_BRAJA - 30S ribosomal protein S10 OS=Bradyrhizobium japonicum GN=rpsJ PE=3 SV=1 RS10_RHOPA - 30S ribosomal protein S10 OS=Rhodopseudomonas palustris GN=rpsJ PE=1 SV=3 gi\|85715132, gi\|... - gi\|85715132\|ref\|ZP_01046116.1\| 30S ribosomal protein S10 [Nitrobacter sp. Nb-311A], gi\|85698047\|gb\|E... RS10_NITHX - 30S ribosomal protein S10 OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=rpsJ PE=3 SV=1 RS10_RHOP5 - 30S ribosomal protein S10 OS=Rhodopseudomonas palustris (strain BisA53) GN=rpsJ PE=3 SV=1 RS10_BRADU - 30S ribosomal protein S10 OS=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 1479... RS10_RHOPS - 30S ribosomal protein S10 OS=Rhodopseudomonas palustris (strain BisB5) GN=rpsJ PE=3 SV=1 rpsJ - rpsJ 30S ribosomal protein S10 3659530:3659838 reverse MW:11668 RS10_NITWN - 30S ribosomal protein S10 OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=rpsJ PE=3 SV=1 RS10_RHOP2 - 30S ribosomal protein S10 OS=Rhodopseudomonas palustris (strain HaA2) GN=rpsJ PE=3 SV=1	147.0	[0..125]	[216..1]
RS10_CHRSD - 30S ribosomal protein S10 OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 137...	147.0	[0..125]	[216..1]

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Predicted Domain #1

Region A:
Residues: [1-124]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIAGVLRRSS LPSRQTLSAA LASFNSCISH NLTPATTGAS VSSRFTLASS PNSFGIRARN  60
   61 IHIRSEPSMI VPAGIASQGY ATVTKDRKNE IKKAKIKISP DNVRPLSRKE IALQKEAAEE 120
  121 STSK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [125-241]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IKGTKICIAI RSFVNPEKQA WCLPPHTRKV AMPDTRTLYT VLRSPHVDKK SREQFEMRFK  60
   61 KRFLVIKAQS HELSKKLFWL KRYRILGAQY ELQFHCKTRL DMTQVLGNIN GSTTNAY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	34.045757
Match:	1p6gJ
Description:	70S ribosome functional complex
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits