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View Structure Prediction Details

Protein: RT02_ARATH
Organism: Arabidopsis thaliana
Length: 219 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RT02_ARATH.

Description E-value Query
Range
Subject
Range
gi|116629458, gi... - gi|116629458|ref|YP_814630.1| 30S ribosomal protein S2 [Lactobacillus gasseri ATCC 33323], gi|116095...
250.0 [0..3] [218..11]

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Predicted Domain #1
Region A:
Residues: [1-219]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTIHAAVIQK LLNTGAHLGR RAAEHHFKQY AYGTRNGMTI IDSDKTLICL RSAAHFVANL  60
   61 AHMRGNIFFV NTNPLFDEII ELTSRRIQGD SYNHNRAMNL WKMGGFLTNS YSPKKFRSRH 120
  121 KKLCFGPTTM PDCVVVFDSE RKSSVILEAS KLQIPVVAIV DPNVPLEFFE KITYPVPARD 180
  181 SVKFVYLFCN VITKCFVAEQ MKLGIKEGSN EDLMKDLAA

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Detection Method: PSI-BLAST
Confidence: 64.30103
Match: 1vs5B
Description: No description for 1vs5B was found.

Predicted functions:

Term Confidence Notes
structural molecule activity 0.46221047595804 bayes_pls_golite062009
structural constituent of ribosome 0.33066443635186 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle