| Protein: | SRS41_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 356 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SRS41_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
219.0 | [0..3] | [356..192] |
|
Region A: Residues: [1-174] |
1 11 21 31 41 51
| | | | | |
1 MKPVFCGNFE YDARESDLER LFRKYGKVER VDMKAGFAFV YMEDERDAED AIRALDRFEY 60
61 GRTGRRLRVE WTKNDRGGAG RSGGSRRSSS GLRPSKTLFV INFDAQNTRT RDLERHFEPY 120
121 GKIVNVRIRR NFAFIQYEAQ EDATRALDAT NSSKLMDKVI SVEYAVKDDD SRGN
|
| Detection Method: |  |
| Confidence: | 34.0 |
| Match: | 1pgzA |
| Description: | Crystal Structure of UP1 Complexed With d(TTAGGGTTAG(6-MI)G); A Human Telomeric Repeat Containing 6-methyl-8-(2-deoxy-beta-ribofuranosyl)isoxanthopteridine (6-MI) |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.950788308762215 | bayes_pls_golite062009 |
| nucleic acid binding | 0.29562225149076 | bayes_pls_golite062009 |
|
Region A: Residues: [175-260] |
1 11 21 31 41 51
| | | | | |
1 GYSPERRRDR SPDRRRRSPS PYRRERGSPD YGRGASPVAH KRERTSPDYG RGRRSPSPYK 60
61 RARLSPDYKR DDRRRERVAS PENGAV
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [261-356] |
1 11 21 31 41 51
| | | | | |
1 RNRSPRKGRG ESRSPPPYEK RRESRSPPPY EKRRESRSPP PYEKRRERSR SRSKSSPENG 60
61 QVESPGQIME VEAGRGYDGA DSPIRESPSR SPPAEE
|
| Detection Method: | |
| Confidence: | 7.154902 |
| Match: | 1g9lA |
| Description: | poly(A) binding protein |
Matching Structure (courtesy of the PDB): |
|
