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View Structure Prediction Details

Protein: RS23_ARATH
Organism: Arabidopsis thaliana
Length: 285 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RS23_ARATH.

Description E-value Query
Range
Subject
Range
gi|2920825 - gi|2920825|gb|AAC04621.1| ribosomal protein S2 [Rattus norvegicus]
451.0 [0..36] [285..6]

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Predicted Domain #1
Region A:
Residues: [1-92]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAERGGERGV ERGGERGDFG RGFGGRGGRG DRGGRGRGGR GGRRGGRASE EEKWVPVTKL  60
   61 GRLVAAGHIK QIEQIYLHSL PVKEYQIIDM LI

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [93-285]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GPTLKDEVMK IMPVQKQTRA GQRTRFKAFV VVGDGNGHVG LGVKCSKEVA TAIRGAIILA  60
   61 KLSVVPVRRG YWGNKIGKPH TVPCKVTGKC GSVTVRMVPA PRGSGIVAAR VPKKVLQFAG 120
  121 IDDVFTSSRG STKTLGNFVK ATFDCLQKTY GFLTPEFWKE TRFSRSPYQE HTDFLASKAL 180
  181 STSKPDPVVE DQA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 49.0
Match: 1s1hE
Description: Structure of the ribosomal 80S-eEF2-sordarin complex from yeast obtained by docking atomic models for RNA and protein components into a 11.7 A cryo-EM map. This file, 1S1H, Contains 40S subunit. The 60S Ribosomal Subunit Is In File 1S1I.
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
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