YRC Public Data Repository - Protein Structure Prediction

Protein:	RRFC_ARATH
Organism:	Arabidopsis thaliana
Length:	275 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RRFC_ARATH.

Description	E-value	Query Range	Subject Range
gi\|7523401, gi\|1... - gi\|7523401\|emb\|CAB86420.1\| putative protein [Arabidopsis thaliana], gi\|11277801\|pir\|\|T48108 hypothet...	355.0	[0..1]	[275..1]
RRFC_ORYSI - Ribosome-recycling factor, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_26546 PE=1 SV=2 gi\|143811453 - gi\|143811453\|sp\|P83648\|RRFC_ORYSA Ribosome recycling factor, chloroplast precursor (Ribosome-releasi... RRFC_ORYSJ - Ribosome-recycling factor, chloroplastic OS=Oryza sativa subsp. japonica GN=Os07g0570700 PE=2 SV=2	276.0	[0..50]	[275..40]
RRFC_SPIOL - Ribosome-recycling factor, chloroplastic OS=Spinacia oleracea GN=RRF PE=1 SV=1	275.0	[0..51]	[275..45]
RRF_DESHD - Ribosome-recycling factor OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=frr PE=3 SV=...	273.0	[0..91]	[275..1]
RRF_VIBCH - Ribosome-recycling factor OS=Vibrio cholerae GN=frr PE=3 SV=1 RRF_VIBCM - Ribosome-recycling factor OS=Vibrio cholerae serotype O1 (strain M66-2) GN=frr PE=3 SV=1 gi\|229507669, gi... - gi\|229507669\|ref\|ZP_04397174.1\| ribosome recycling factor [Vibrio cholerae BX 330286], gi\|229355174\|... gi\|254286071, gi... - gi\|254286071\|ref\|ZP_04961032.1\| ribosome recycling factor [Vibrio cholerae AM-19226], gi\|197752556\|r... gi\|229512136, gi... - gi\|229512136\|ref\|ZP_04401615.1\| ribosome recycling factor [Vibrio cholerae B33], gi\|229352101\|gb\|EEO... gi\|153827697, gi... - gi\|153827697\|ref\|ZP_01980364.1\| ribosome recycling factor [Vibrio cholerae MZO-2], gi\|149737829\|gb\|E... gi\|229343960, gi... - gi\|229519271\|ref\|ZP_04408714.1\| ribosome recycling factor [Vibrio cholerae RC9], gi\|229343960\|gb\|EEO... gi\|229522203, gi... - gi\|229522203\|ref\|ZP_04411620.1\| ribosome recycling factor [Vibrio cholerae TM 11079-80], gi\|22934112... gi\|229337841, gi... - gi\|229524260\|ref\|ZP_04413665.1\| ribosome recycling factor [Vibrio cholerae bv. albensis VL426], gi\|2... gi\|229528740, gi... - gi\|229528740\|ref\|ZP_04418130.1\| ribosome recycling factor [Vibrio cholerae 12129(1)], gi\|229332514\|g... gi\|229607173, gi... - gi\|229607173\|ref\|YP_002877821.1\| ribosome recycling factor [Vibrio cholerae MJ-1236], gi\|229369828\|g... gi\|254845092, gi... - gi\|254849387\|ref\|ZP_05238737.1\| ribosome recycling factor [Vibrio cholerae MO10], gi\|254845092\|gb\|EE... RRF_VIBC3 - Ribosome-recycling factor OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / ... RRF_VIBCH - Ribosome-recycling factor OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) G... gi\|153221229, gi... - gi\|153221229\|ref\|ZP_01952244.1\| ribosome recycling factor [Vibrio cholerae MAK 757], gi\|124119758\|gb... gi\|153803002, gi... - gi\|153803002\|ref\|ZP_01957588.1\| ribosome recycling factor [Vibrio cholerae MZO-3], gi\|124121445\|gb\|E...	271.0	[0..91]	[275..1]
RRF_ERWCT - Ribosome-recycling factor OS=Erwinia carotovora subsp. atroseptica GN=frr PE=3 SV=1 RRF_PECAS - Ribosome-recycling factor OS=Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672) GN=frr PE...	271.0	[0..91]	[274..1]
RRF_DESHY - Ribosome-recycling factor OS=Desulfitobacterium hafniense (strain Y51) GN=frr PE=3 SV=1	271.0	[0..91]	[275..1]
RRF_CUPPJ - Ribosome-recycling factor OS=Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197) GN=frr PE=3 SV=1	270.0	[0..90]	[275..1]
RRF_CUPMC - Ribosome-recycling factor OS=Cupriavidus metallidurans (strain ATCC 43123 / DSM 2839 / NBRC 102507 /...	269.0	[0..90]	[275..1]
RRF_LEGPA - Ribosome-recycling factor OS=Legionella pneumophila (strain Paris) GN=frr PE=3 SV=1	269.0	[0..91]	[275..1]

Back

Predicted Domain #1

Region A:
Residues: [1-90]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAASFSSTAP TTPVLRFRAN YSKPLLSLPD SCLRIISSAI SPSTRLIACS FKTDKLPLGA  60
   61 GVNLSGGPVV KRSLQKRLVI RSATIEEIEA

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.849	d.57.1	DNA damage-inducible protein DinI
View	Download	0.849	d.57.1	DNA damage-inducible protein DinI
View	Download	0.517	d.58.4	Dimeric alpha+beta barrel
View	Download	0.468	d.52.7	Ribosome-binding factor A, RbfA
View	Download	0.386	d.74.5	Hypothetical protein Yml108w
View	Download	0.376	d.58.4	Dimeric alpha+beta barrel
View	Download	0.330	d.58.7	RNA-binding domain, RBD
View	Download	0.288	a.60.4	DNA repair protein Rad51, N-terminal domain
View	Download	0.282	d.58.44	Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
View	Download	0.272	a.24.13	Domain of the SRP/SRP receptor G-proteins

Predicted Domain #2

Region A:
Residues: [91-275]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EKSAIETDVK SKMEKTIETL RTSFNSIRTG RSNAAMLDKI EVEYYGSPVS LKSIAQISTP  60
   61 DGSSLLLQPY DKSSLKAIEK AIVNSDLGVT PNNDGDVIRL SLPPLTSDRR KELSKVVAKQ 120
  121 SEEGKVALRN IRRDALKSYD KLEKEKKLSE DNVKDLSSDL QKLIDVYMKK IEELYKQKEK 180
  181 ELMKV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	71.69897
Match:	1is1A
Description:	Ribosome recycling factor, RRF
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits