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View Structure Prediction Details

Protein: RPP8_ARATH
Organism: Arabidopsis thaliana
Length: 908 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for RPP8_ARATH.

Predicted Domain #1
Region A:
Residues: [1-375]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEAFVSFGL EKLWDLLSRE SERLQGIDGQ LDGLKRQLRS LQSLLKDADA KKHGSDRVRN  60
   61 FLEDVKDLVF DAEDIIESYV LNKLSGKGKG VKKHVRRLAC FLTDRHKVAS DIEGITKRIS 120
  121 EVIGEMQSFG IQQIIDGGRS LSLQERQRVQ REIRQTYPDS SESDLVGVEQ SVKELVGHLV 180
  181 ENDVHQVVSI AGMGGIGKTT LARQVFHHDL VRRHFDGFAW VCVSQQFTQK HVWQRILQEL 240
  241 QPHDGDILQM DEYALQRKLF QLLEAGRYLV VLDDVWKKED WDVIKAVFPR KRGWKMLLTS 300
  301 RNEGVGIHAD PTCLTFRASI LNPEESWKLC ERIVFPRRDE TEVRLDEEME AMGKEMVTHC 360
  361 GGLPLAVKAL GGLLA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 14.0
Match: 1z6tA
Description: Structure of the apoptotic protease-activating factor 1 bound to ADP
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [376-908]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NKHTVPEWKR VFDNIGSQIV GGSWLDDNSL NSVYRILSLS YEDLPTHLKH CFLNLAHFPE  60
   61 DSEISTYSLF YYWAAEGIYD GSTIEDSGEY YLEELVRRNL VIADDNYLSW QSKYCQMHDM 120
  121 MREVCLSKAK EENFLQIIID PTCTSTINAQ SPSRSRRLSI HSGKAFHILG HKNKTKVRSL 180
  181 IVPRFEEDYW IRSASVFHNL TLLRVLDLSW VKFEGGKLPC SIGGLIHLRY LSLYEAKVSH 240
  241 LPSTMRNLKL LLYLNLRVDT EEPIHVPNVL KEMIQLRYLS LPLKMDDKTK LELGDLVNLE 300
  301 YLYGFSTQHS SVTDLLRMTK LRYLAVSLSE RCNFETLSSS LRELRNLETL NFLFSLETYM 360
  361 VDYMGEFVLD HFIHLKQLGL AVRMSKIPDQ HQFPPHLVHL FLIYCGMEED PMPILEKLLH 420
  421 LKSVRLARKA FLGSRMVCSK GGFPQLCVIE ISKESELEEW IVEEGSMPCL RTLTIDDCKK 480
  481 LKELPDGLKY ITSLKELKIE GMKREWKEKL VPGGEDYYKV QHIPDVQFIN CDQ

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 9.30103
Match: 2z7xA
Description: No description for 2z7xA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle