YRC Public Data Repository - Protein Structure Prediction

Protein:	RM21_ARATH
Organism:	Arabidopsis thaliana
Length:	270 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RM21_ARATH.

Description	E-value	Query Range	Subject Range
gi\|7269995, gi\|2... - gi\|7269995\|emb\|CAB79811.1\| putative protein [Arabidopsis thaliana], gi\|2980773\|emb\|CAA18200.1\| putat...	314.0	[0..5]	[270..521]
gi\|5712722 - gi\|5712722\|gb\|AAD47625.1\| unknown [Pseudomonas sp. BG33R]	184.0	[0..98]	[243..65]
gi\|26987424, gi\|... - gi\|26987424\|ref\|NP_742849.1\| 50S ribosomal protein L21 [Pseudomonas putida KT2440], gi\|24982083\|gb\|A...	179.0	[0..98]	[243..31]
gi\|71735895, gi\|... - gi\|71735895\|ref\|YP_273005.1\| ribosomal protein L21 [Pseudomonas syringae pv. phaseolicola 1448A], gi...	174.0	[0..98]	[243..14]
mRpL21-PA, FBpp0... - The gene mitochondrial ribosomal protein L21 is referred to in FlyBase by the symbol Dmel\mRpL21 (CG...	161.0	[0..90]	[245..37]
RL21_DECAR - 50S ribosomal protein L21 OS=Dechloromonas aromatica (strain RCB) GN=rplU PE=3 SV=1	155.0	[0..140]	[243..1]
gi\|213971071, gi... - gi\|213971071\|ref\|ZP_03399191.1\| ribosomal protein L21 [Pseudomonas syringae pv. tomato T1], gi\|21392... RL21_PSESM - 50S ribosomal protein L21 OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=rplU PE=3 SV=1 RL21_PSESM - 50S ribosomal protein L21 OS=Pseudomonas syringae pv. tomato GN=rplU PE=3 SV=1	154.0	[0..140]	[243..1]
RL21_PSE14 - 50S ribosomal protein L21 OS=Pseudomonas savastanoi pv. phaseolicola (strain 1448A / Race 6) GN=rplU... RL21_PSEU2 - 50S ribosomal protein L21 OS=Pseudomonas syringae pv. syringae (strain B728a) GN=rplU PE=3 SV=1 gi\|237801841 - gi\|237801841\|ref\|ZP_04590302.1\| 50S ribosomal protein L21 [Pseudomonas syringae pv. oryzae str. 1_6] tr\|F3GAK1\|F3GAK1... - 50S ribosomal protein L21 OS=Pseudomonas syringae pv. pisi str. 1704B GN=rplU PE=3 SV=1	154.0	[0..140]	[243..1]
RL21_THIDA - 50S ribosomal protein L21 OS=Thiobacillus denitrificans (strain ATCC 25259) GN=rplU PE=3 SV=1	153.0	[0..140]	[243..1]
gi\|84691601, gi\|... - gi\|84702355\|ref\|ZP_01016930.1\| LSU ribosomal protein L21P [Parvularcula bermudensis HTCC2503], gi\|84...	153.0	[0..134]	[266..50]

Back

Predicted Domain #1

Region A:
Residues: [1-139]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASLRCFREL SRRATTVFSI NQTRSISSFH GIEFSGTSIS HGTVIPNRSL TRNLPWYSHW  60
   61 YRSQDRCFSS NTKDTDEDEE SSEGEDDDEE EGEDFEDSAD MEVEREYSPA EKVEEAEEIG 120
  121 YKVMGPLKPS ERLFKPYEP

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [140-270]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VFAIVQIGSH QFKVSNGDSI FTEKLKFCDI NDKLELTKVL LLGSASQTII GRPILPDATV  60
   61 HAVVEEHALD EKVLIFKKKR RKNYRRTRGH RQELTKLRIT DIQGIEKPEP KIVHKPSKEA 120
  121 VTEQTKAELV A

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	34.045757
Match:	1vs6R
Description:	No description for 1vs6R was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits