YRC Public Data Repository - Protein Structure Prediction

Protein:	RLA12_ARATH
Organism:	Arabidopsis thaliana
Length:	113 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RLA12_ARATH.

Description	E-value	Query Range	Subject Range
gi\|10177851, gi\|... - gi\|67633816\|gb\|AAY78832.1\| putative 60S acidic ribosomal protein P1 [Arabidopsis thaliana], gi\|15238...	119.0	[0..3]	[113..2]
gi\|11141354 - gi\|11141354\|emb\|CAC16109.1\| acidic ribosomal protein 1 [Rana esculenta]	117.0	[0..1]	[113..1]
gi\|38086394, gi\|... - gi\|94408796\|ref\|XP_993025.1\| PREDICTED: similar to 60S acidic ribosomal protein P1 isoform 2 [Mus mu...	108.0	[0..1]	[113..1]
gi\|39582094, gi\|... - gi\|39582094\|emb\|CAE63737.1\| Hypothetical protein CBG08266 [Caenorhabditis briggsae], gi\|187032828\|em... gi\|157747115 - gi\|157747115\|ref\|XP_001668652.1\| Hypothetical protein CBG08266 [Caenorhabditis briggsae AF16]	106.0	[0..7]	[113..1]
gi\|114654113, gi... - gi\|114654113\|ref\|XP_001163471.1\| PREDICTED: similar to ribosomal protein P1 isoform 2 [Pan troglodyt...	106.0	[0..1]	[113..1]
gi\|110671420 - gi\|110671420\|gb\|ABG81961.1\| putative 60S acidic ribosomal protein P1 [Diaphorina citri]	106.0	[0..1]	[113..1]
RpLP1-PA, FBpp03... - The gene Ribosomal protein LP1 is referred to in FlyBase by the symbol Dmel\RpLP1 (CG4087, FBgn00025... gi\|194123351, gi... - gi\|195350097\|ref\|XP_002041578.1\| GM16740 [Drosophila sechellia], gi\|194123351\|gb\|EDW45394.1\| GM16740... gi\|194853475, gi... - gi\|194853475\|ref\|XP_001968169.1\| GG24717 [Drosophila erecta], gi\|190660036\|gb\|EDV57228.1\| GG24717 [D... gi\|195575543, gi... - gi\|195575543\|ref\|XP_002077637.1\| GD23023 [Drosophila simulans], gi\|194189646\|gb\|EDX03222.1\| GD23023 ...	104.0	[0..1]	[113..1]
gi\|4239713 - gi\|4239713\|emb\|CAA72658.1\| acidic ribosomal protein [Ceratitis capitata]	103.0	[0..1]	[113..1]

Back

Predicted Domain #1

Region A:
Residues: [1-113]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTVGELACS YAVMILEDEG IAITSDKIAT LVKAAGVEIE SYWPMLFAKM AEKRNVTDLI  60
   61 MNVGAGGGGG GAPVSAAAPA AAGGAAAAAP AKEEKKDEPA EESDGDLGFG LFD

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	28.008774
Match:	PF00428.10
Description:	No description for PF00428.10 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits