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View Structure Prediction Details

Protein: RL4A_ARATH
Organism: Arabidopsis thaliana
Length: 406 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RL4A_ARATH.

Description E-value Query
Range
Subject
Range
gi|26450328 - gi|26450328|dbj|BAC42280.1| putative 60S ribosomal protein [Arabidopsis thaliana]
510.0 [0..1] [406..2]

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Predicted Domain #1
Region A:
Residues: [1-406]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAAAARPLV TIQTLDGDMS TDQSSTVVLP DVMTAPVRPD IVNFVHAQIS NNSRQPYAVS  60
   61 KKAGHQTSAE SWGTGRAVSR IPRVPGGGTH RAGQAAFGNM CRGGRMFAPT KIWRRWHRRV 120
  121 NVNMKRHAIV SAIAATAVPA LVMARGHKIE NVPEMPLVVS DSAEAVEKTS AAIKVLKQIG 180
  181 AYDDAEKAKN SIGIRPGKGK MRNRRYISRK GPLVVYGTEG SKIVKAFRNL PGVELCHVER 240
  241 LNLLKLAPGG HLGRFVIWTK SAFEKLESIY GSFEKPSEKK KGYVLPRAKM VNADLARIIN 300
  301 SDEIQSVVNP IKKDAKRAVL KKNPLKNLNV MLKLNPYAKT AKRMSLLAEA QRVKAKKEKL 360
  361 AKKRKTVTKE EALAIKAAGK SWYKTMISDS DYTEFDNFTK WLGASQ

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 93.39794
Match: 1s1iD
Description: Structure of the ribosomal 80S-eEF2-sordarin complex from yeast obtained by docking atomic models for RNA and protein components into a 11.7 A cryo-EM map. This file, 1S1I, Contains 60S subunit. The 40S Ribosomal Subunit Is In File 1S1H.
Matching Structure (courtesy of the PDB):

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