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View Structure Prediction Details

Protein: RLA01_ARATH
Organism: Arabidopsis thaliana
Length: 317 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RLA01_ARATH.

Description E-value Query
Range
Subject
Range
gi|27503344, gi|... - gi|27503344|gb|AAH42268.1| Arbp-prov protein [Xenopus laevis], gi|147904649|ref|NP_001080134.1| acid...
362.0 [0..2] [316..1]

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Predicted Domain #1
Region A:
Residues: [1-317]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVKATKAEK KIVYDSKLCQ LLNEYSQILV VAADNVGSTQ LQNIRKGLRG DSVVLMGKNT  60
   61 MMKRSVRIHA DKTGNQAFLS LLPLLQGNVG LIFTKGDLKE VSEEVAKYKV GAPARVGLVA 120
  121 PIDVVVQPGN TGLDPSQTSF FQVLNIPTKI NKGTVEIITP VELIKKGDKV GSSEAALLAK 180
  181 LGIRPFSYGL VVESVYDNGS VFNPEVLNLT EDDLVEKFAA GVSMITALSL AISYPTVAAA 240
  241 PHMFLNAYKN VLAVALATEY SFPQAENVKE FLKDPTKFAV AVAAPVSGES GGAVVAVAVE 300
  301 EEAAEESDGD MGFDLFG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 58.522879
Match: 1jj2G
Description: Ribosomal protein L10
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle