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View Structure Prediction Details

Protein: RK9_ARATH
Organism: Arabidopsis thaliana
Length: 197 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RK9_ARATH.

Description E-value Query
Range
Subject
Range
RK9_WHEAT - 50S ribosomal protein L9, chloroplastic OS=Triticum aestivum GN=RPL9 PE=2 SV=1
198.0 [0..1] [194..1]

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Predicted Domain #1
Region A:
Residues: [1-197]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASSTALSLS WSSSPCWSHS FNGGANETLK VSERRFNFEV VSQKKAKKLR KVILKEDVTD  60
   61 LGKQGQLLDV KAGFFRNFLL PTGKAQLMTP LLLKELKMED ERIEAEKQRV KEEAQQLAMV 120
  121 FQTVGAFKVK RKGGKGKLIF GSVTAQDLVD IIKSQLQKDI DKRLVSLPEI RETGEYIAEL 180
  181 KLHPDVTARV KINVFAN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 46.154902
Match: 1p85F
Description: 70S ribosome functional complex
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
structural constituent of ribosome 8.6660890573497 bayes_pls_golite062009
structural molecule activity 8.10075613300028 bayes_pls_golite062009
catalytic activity 0.295853503406924 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle