YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: RK27_ARATH
Organism: Arabidopsis thaliana
Length: 198 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RK27_ARATH.

Description E-value Query
Range
Subject
Range
gi|21553582 - gi|21553582|gb|AAM62675.1| 50S ribosomal protein L27 [Arabidopsis thaliana]
293.0 [0..3] [198..1]

Back

Predicted Domain #1
Region A:
Residues: [1-198]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAMATSMSLN LIGAFKGLSL SSTSSFLRGD LSFSPKTSFT VTLPLENLQA PIPLTIESAH  60
   61 KKGAGSTKNG RDSPGQRLGV KIYGDQVAKP GAIIVRQRGT KFHAGKNVGI GKDHTIFSLI 120
  121 DGLVKFEKFG PDRKKISVYP REIVPENPNS YRARKRENFR LQREKKKARR ENYSYTLPTP 180
  181 ELVLASASVD DAEANPEC

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 34.69897
Match: 1vs6W
Description: No description for 1vs6W was found.

Predicted functions:

Term Confidence Notes
structural constituent of ribosome 9.93798084434094 bayes_pls_golite062009
structural molecule activity 9.3625249805433 bayes_pls_golite062009
peptidyltransferase activity 3.94173449567504 bayes_pls_golite062009
transferase activity, transferring amino-acyl groups 0.479709297593055 bayes_pls_golite062009
catalytic activity 0.161830442565647 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle