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View Structure Prediction Details

Protein: RK15_ARATH
Organism: Arabidopsis thaliana
Length: 277 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RK15_ARATH.

Description E-value Query
Range
Subject
Range
gi|71241, gi|16497 - gi|71241|pir||R5MUL5 ribosomal protein L15 precursor, chloroplast - Arabidopsis thaliana, gi|16497|e...
279.0 [0..1] [258..1]

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Predicted Domain #1
Region A:
Residues: [1-277]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATPLSISSN PLTSRHCYRL HLSSTSFKGN VSVLGANPSQ ILSLKLNQTL KTRNQQQFAR  60
   61 PLVVVSQTAA TSSAVVAPER FRLDNLGPQP GSRKKQKRKG RGISAGQGAS CGFGMRGQKS 120
  121 RSGPGIMRGF EGGQTALYRR LPKLRGIAGG MRSGLPKYLP VNIKDIETAG FQEGDEVSLE 180
  181 TLKQKGLINP SGRERKLPLK ILGTGELSMK LTFKARAFST QAKEKLEASG CTLTVLPGRK 240
  241 KWVKPSVAKN QARADEYFAK KRAAAAEAAT SEPAASA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 36.69897
Match: 1p85J
Description: 70S ribosome functional complex
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
structural constituent of ribosome 9.4893803036544 bayes_pls_golite062009
structural molecule activity 8.91740015840503 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle