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View Structure Prediction Details

Protein: RLA21_ARATH
Organism: Arabidopsis thaliana
Length: 115 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RLA21_ARATH.

Description E-value Query
Range
Subject
Range
gi|39582094, gi|... - gi|39582094|emb|CAE63737.1| Hypothetical protein CBG08266 [Caenorhabditis briggsae], gi|187032828|em...
gi|157747115 - gi|157747115|ref|XP_001668652.1| Hypothetical protein CBG08266 [Caenorhabditis briggsae AF16]
120.0 [0..1] [115..1]

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Predicted Domain #1
Region A:
Residues: [1-115]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKVVAAFLLA VLSGKASPTT GDIKDILGSV GAETEDSQIE LLLKEVKGKD LAELIAAGRE  60
   61 KLASVPSGGG GGVAVASATS GGGGGGGAPA AESKKEEKKE EKEESDDDMG FSLFE

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 25.721246
Match: PF00428.10
Description: No description for PF00428.10 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.323 N/A N/A a.4.5 "Winged helix" DNA-binding domain
View Download 0.295 N/A N/A a.100.1 6-phosphogluconate dehydrogenase C-terminal domain-like
View Download 0.278 N/A N/A d.150.1 4'-phosphopantetheinyl transferase
View Download 0.256 N/A N/A d.79.5 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF
View Download 0.242 N/A N/A d.58.18 Regulatory domain in the aminoacid metabolism


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