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View Structure Prediction Details

Protein: RL262_ARATH
Organism: Arabidopsis thaliana
Length: 146 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RL262_ARATH.

Description E-value Query
Range
Subject
Range
gi|50754890 - gi|50754890|ref|XP_414531.1| PREDICTED: similar to ribosomal protein L26; 60S ribosomal protein L26 ...
193.0 [0..1] [143..133]

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Predicted Domain #1
Region A:
Residues: [1-146]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFNPRVSSS RRKNRKAHFT APSSVRRVLM SSPLSKDLRN KHNVRSMPIR KDDEVQVVRG  60
   61 TFKGREGKVM QVYRRKWVIH IERITREKVN GSTVNVGVNA SNVMITKLRL DKDRKSLLER 120
  121 KANGRAAADK EKGTKFSAED VMENVD

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 30.39794
Match: 1s1iU
Description: Structure of the ribosomal 80S-eEF2-sordarin complex from yeast obtained by docking atomic models for RNA and protein components into a 11.7 A cryo-EM map. This file, 1S1I, Contains 60S subunit. The 40S Ribosomal Subunit Is In File 1S1H.
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle