YRC Public Data Repository - Protein Structure Prediction

Protein:	RL223_ARATH
Organism:	Arabidopsis thaliana
Length:	124 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RL223_ARATH.

Description	E-value	Query Range	Subject Range
gi\|34859197, gi\|... - gi\|34859197\|ref\|XP_345432.1\| PREDICTED: similar to RIKEN cDNA 3110001N18 [Rattus norvegicus], gi\|109...	179.0	[0..1]	[123..1]
gi\|240108894 - gi\|240108894\|gb\|EER27063.1\| 60S ribosomal protein L22, putative [Coccidioides posadasii C735 delta S... gi\|90298783, gi\|... - gi\|90298783\|gb\|EAS28414.1\| 60S ribosomal protein L22 [Coccidioides immitis RS], gi\|119175604\|ref\|XP_...	175.0	[0..1]	[124..1]
gi\|46095635, gi\|... - gi\|71004334\|ref\|XP_756833.1\| hypothetical protein UM00686.1 [Ustilago maydis 521], ref\|XP_398301.1\| ...	172.0	[0..3]	[124..60]
gi\|113414782, gi... - gi\|30149441\|ref\|XP_114317.3\| PREDICTED: hypothetical protein XP_114317 [Homo sapiens], gi\|119598909\|...	169.0	[0..1]	[123..61]
gi\|94384550, gi\|... - gi\|94384550\|ref\|XP_979887.1\| PREDICTED: similar to 60S ribosomal protein L22 (Heparin-binding protei...	168.0	[0..18]	[124..31]
gi\|109044347 - gi\|109044347\|ref\|XP_001084467.1\| PREDICTED: similar to ribosomal protein L22 like 1 [Macaca mulatta]	168.0	[0..1]	[123..102]
gi\|15213770 - gi\|15213770\|gb\|AAK92160.1\|AF400188_1 ribosomal protein L22 [Spodoptera frugiperda]	167.0	[0..15]	[124..38]
CNAG_06811T0, CN... - \| Cryptococcus neoformans hypothetical protein similar to RPL22 (translation) (127 aa), \| CNAG_06811... gi\|25573213 - gi\|25573213\|gb\|AAN75181.1\| RPL22 [Cryptococcus neoformans var. grubii]	167.0	[0..2]	[124..4]

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Predicted Domain #1

Region A:
Residues: [1-124]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRGNAAAAK GKKKGVSFTI DCSKPVDDKI MEIASLEKFL QERIKVGGKA GALGDSVSIT  60
   61 REKSKITVTA DGQFSKRYLK YLTKKYLKKH NVRDWLRVIA ANKDRNLYEL RYFNIAENEA 120
  121 EEED

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	59.167491
Match:	PF01776.8
Description:	No description for PF01776.8 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.928	N/A	N/A	d.52.3	Prokaryotic type KH domain (KH-domain type II)
View	Download	0.922	N/A	N/A	d.52.3	Prokaryotic type KH domain (KH-domain type II)
View	Download	0.756	N/A	N/A	c.52.2	tRNA splicing endonuclease, C-terminal domain
View	Download	0.754	N/A	N/A	d.58.49	YajQ-like
View	Download	0.754	N/A	N/A	d.58.49	YajQ-like
View	Download	0.748	N/A	N/A	d.108.1	Acyl-CoA N-acyltransferases (Nat)
View	Download	0.742	N/A	N/A	d.58.57	Description not found.
View	Download	0.719	N/A	N/A	d.109.1	Actin depolymerizing proteins
View	Download	0.699	N/A	N/A	d.109.1	Actin depolymerizing proteins
View	Download	0.641	N/A	N/A	d.110.4	SNARE-like
View	Download	0.552	N/A	N/A	d.58.14	Ribosomal protein S6
View	Download	0.516	N/A	N/A	d.227.1	OsmC-like
View	Download	0.490	N/A	N/A	d.108.1	Acyl-CoA N-acyltransferases (Nat)
View	Download	0.472	N/A	N/A	d.52.5	Probable GTPase Der, C-terminal domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits