YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: RS156_ARATH
Organism: Arabidopsis thaliana
Length: 160 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RS156_ARATH.

Description E-value Query
Range
Subject
Range
gi|125557476 - gi|125557476|gb|EAZ03012.1| hypothetical protein OsI_25153 [Oryza sativa Indica Group]
RS15_ORYSA - 40S ribosomal protein S15 - Oryza sativa (Rice)
RS15_ORYSJ - 40S ribosomal protein S15 OS=Oryza sativa subsp. japonica GN=RPS15 PE=2 SV=2
223.0 [0..1] [160..1]

Back

Predicted Domain #1
Region A:
Residues: [1-160]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAINEPEFAT AVAVATKKRT FKKFSFRGFN VDALLKMSNV DLAKLFNARV RRRFYRGLKK  60
   61 QPLILIKKLR RAKKEASDEN KMKPEVVKTH LRNMIIVPEM IGSVVGVHNG KKFNEIVIKP 120
  121 EMIGHYLAEF SMTCKKVNHH RPRICGCCCF RRSTRFIPLR 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 30.154902
Match: 2gy9S
Description: No description for 2gy9S was found.

Predicted functions:

Term Confidence Notes
structural constituent of ribosome 9.93798084434094 bayes_pls_golite062009
structural molecule activity 9.3625249805433 bayes_pls_golite062009
binding 1.68889672870435 bayes_pls_golite062009
protein binding 0.290694587603986 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle