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View Structure Prediction Details

Protein: RS153_ARATH
Organism: Arabidopsis thaliana
Length: 150 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RS153_ARATH.

Description E-value Query
Range
Subject
Range
gi|125557476 - gi|125557476|gb|EAZ03012.1| hypothetical protein OsI_25153 [Oryza sativa Indica Group]
RS15_ORYSA - 40S ribosomal protein S15 - Oryza sativa (Rice)
RS15_ORYSJ - 40S ribosomal protein S15 OS=Oryza sativa subsp. japonica GN=RPS15 PE=2 SV=2
232.0 [0..3] [150..7]

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Predicted Domain #1
Region A:
Residues: [1-150]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADPEVAAAG IVKKRTFKKF SFRGVDLDAL LDMSTDDLVK LFPSRIRRRF SRGLTRKPMA  60
   61 LIKKLRKAKI EAPAGEKPAA VRTHLRNMII VPEMIGSVIG VYNGKTFNQV EIKPEMIGHY 120
  121 LAEFSISYKP VKHGRPGVGA TNSSRFIPLK 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 24.0
Match: 1s1hS
Description: Structure of the ribosomal 80S-eEF2-sordarin complex from yeast obtained by docking atomic models for RNA and protein components into a 11.7 A cryo-EM map. This file, 1S1H, Contains 40S subunit. The 60S Ribosomal Subunit Is In File 1S1I.
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle