YRC Public Data Repository - Protein Structure Prediction

Protein:	RS132_ARATH
Organism:	Arabidopsis thaliana
Length:	151 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RS132_ARATH.

Description	E-value	Query Range	Subject Range
gi\|38101780, gi\|... - gi\|39975009\|ref\|XP_368895.1\| 40S ribosomal protein S13 [Magnaporthe grisea 70-15], gb\|EAA48691.1\| hy...	222.0	[0..1]	[151..1]
gi\|109139180 - gi\|109139180\|ref\|XP_001119129.1\| PREDICTED: similar to ribosomal protein S13 [Macaca mulatta]	220.0	[0..1]	[150..1]
gi\|61369380 - gi\|61369380\|gb\|AAX43326.1\| ribosomal protein S13 [synthetic construct]	220.0	[0..1]	[151..1]
RS13_CHICK - 40S ribosomal protein S13 OS=Gallus gallus GN=RPS13 PE=2 SV=3 CCDS7823.1_1 - null gi\|51980681 - gb\|AAH82187.1\| Unknown (protein for MGC:98670) [Xenopus laevis] gi\|55635357 - gi\|55635357\|ref\|XP_508306.1\| PREDICTED: hypothetical protein [Pan troglodytes] ENSCJAT00000018561 - null gi\|109107163 - gi\|109107163\|ref\|XP_001086088.1\| PREDICTED: similar to ribosomal protein S13 [Macaca mulatta] RS13_MOUSE - 40S ribosomal protein S13 OS=Mus musculus GN=Rps13 PE=1 SV=2 gi\|197127940, gi... - gi\|197127940\|gb\|ACH44438.1\| putative ribosomal protein S13 variant 1 [Taeniopygia guttata], gi\|19712... RPS13 - ribosomal protein S13 RS13_BOVIN - 40S ribosomal protein S13 OS=Bos taurus GN=RPS13 PE=2 SV=3 gi\|73988614, gi\|... - gi\|73988614\|ref\|XP_864902.1\| PREDICTED: similar to ribosomal protein S13 isoform 2 [Canis familiaris... gi\|123995225, gi... - gi\|61359234\|gb\|AAX41687.1\| ribosomal protein S13 [synthetic construct], gi\|123995225\|gb\|ABM85214.1\| ... gi\|542155715\|ref... - PREDICTED: 40S ribosomal protein S13 isoform X2 [Zonotrichia albicollis], PREDICTED: 40S ribosomal p... ENSOCUP000000048... - pep:novel scaffold:oryCun2:GL018733:1083722:1086211:-1 gene:ENSOCUG00000005536 transcript:ENSOCUT000... tr\|M3W3Y8\|M3W3Y8... - Ribosomal protein S13 OS=Felis catus GN=RPS13 PE=3 SV=1 RS13_RAT - 40S ribosomal protein S13 OS=Rattus norvegicus GN=Rps13 PE=1 SV=2 gi\|149719481 - gi\|149719481\|ref\|XP_001504999.1\| PREDICTED: similar to ribosomal protein S13 [Equus caballus] gi\|57730 - gi\|57730\|emb\|CAA37458.1\| unnamed protein product [Rattus rattus]	220.0	[0..1]	[151..1]
gi\|210104597, gi... - gi\|219460218\|ref\|XP_002227825.1\| hypothetical protein BRAFLDRAFT_115249 [Branchiostoma floridae], gi... gi\|24266981 - gi\|24266981\|gb\|AAN52387.1\| ribosomal protein S13 [Branchiostoma belcheri]	220.0	[0..1]	[151..1]
gi\|32419563, gi\|... - gi\|32419563\|ref\|XP_330225.1\| hypothetical protein [Neurospora crassa], gi\|28925804\|gb\|EAA34807.1\| 40... gi\|85111661 - gi\|85111661\|ref\|XP_964043.1\| 40S ribosomal protein S13 [Neurospora crassa OR74A]	219.0	[0..1]	[151..1]
gi\|90304038, gi\|... - gi\|90304038\|gb\|EAS33669.1\| hypothetical protein CIMG_04693 [Coccidioides immitis RS], gi\|119189291\|r... gi\|240111292 - gi\|240111292\|gb\|EER29445.1\| 40S ribosomal protein S13, putative [Coccidioides posadasii C735 delta S...	219.0	[0..1]	[151..1]
RS13_XENLA - 40S ribosomal protein S13 OS=Xenopus laevis GN=rps13 PE=3 SV=2 gi\|89269947, gi\|... - gi\|89269947\|emb\|CAJ81269.1\| ribosomal protein S13 [Xenopus tropicalis], gi\|62860010\|ref\|NP_001016602...	219.0	[0..1]	[151..1]
gi\|54609309, gi\|... - gi\|54609309\|gb\|AAV34870.1\| ribosomal protein S13 [Bombyx mori], gi\|148298648\|ref\|NP_001091754.1\| rib...	219.0	[0..1]	[151..1]
RS13_CRIGR - 40S ribosomal protein S13 OS=Cricetulus griseus GN=RPS13 PE=3 SV=3	219.0	[0..1]	[151..1]

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Predicted Domain #1

Region A:
Residues: [1-61]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRMHSRGKG ISASALPYKR SSPSWLKTTS QDVDESICKF AKKGLTPSQI GVILRDSHGI  60
   61 P

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	37.481486
Match:	PF08069.3
Description:	No description for PF08069.3 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.615	N/A	N/A	a.182.1	GatB/YqeY domain
View	Download	0.580	N/A	N/A	a.182.1	GatB/YqeY domain
View	Download	0.539	N/A	N/A	a.5.10	Description not found.
View	Download	0.498	N/A	N/A	a.5.3	N-terminal domain of phosphatidylinositol transfer protein sec14p
View	Download	0.448	N/A	N/A	a.8.1	Bacterial immunoglobulin/albumin-binding domains
View	Download	0.330	N/A	N/A	a.5.2	UBA-like
View	Download	0.293	N/A	N/A	a.179.1	Replisome organizer (g39p helicase loader/inhibitor protein)
View	Download	0.266	N/A	N/A	a.5.6	Hypothetical protein MTH1615
View	Download	0.264	N/A	N/A	a.179.1	Replisome organizer (g39p helicase loader/inhibitor protein)
View	Download	0.264	N/A	N/A	a.8.1	Bacterial immunoglobulin/albumin-binding domains

Predicted Domain #2

Region A:
Residues: [62-151]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QVKSVTGSKI LRILKAHGLA PEIPEDLYHL IKKAVAIRKH LERNRKDKDS KFRLILVESR  60
   61 IHRLARYYKK TKKLPPVWKY ESTTASTLVA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	23.0
Match:	1yshE
Description:	Localization and dynamic behavior of ribosomal protein L30e
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits