YRC Public Data Repository - Protein Structure Prediction

Protein:	PSK1_ARATH
Organism:	Arabidopsis thaliana
Length:	87 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PSK1_ARATH.

Description	E-value	Query Range	Subject Range
gi\|115451733, gi... - gi\|115451733\|ref\|NP_001049467.1\| Os03g0232400 [Oryza sativa (japonica cultivar-group)], gi\|113547938...	102.0	[0..2]	[84..65]
gi\|23466393 - gi\|23466393\|tpg\|DAA00287.1\| TPA: TPA_exp: putative phytosulfokine peptide precursor [Lycopersicon es...	101.0	[0..4]	[85..2]
PSK5_ARATH - Phytosulfokines 5 OS=Arabidopsis thaliana GN=PSK5 PE=2 SV=1	100.0	[0..12]	[85..4]
gi\|23466407 - gi\|23466407\|tpg\|DAA00294.1\| TPA: TPA_exp: putative phytosulfokine peptide precursor [Solanum tuberos...	99.0	[0..4]	[85..2]
gi\|23466395 - gi\|23466395\|tpg\|DAA00288.1\| TPA: TPA_exp: putative phytosulfokine peptide precursor [Mesembryanthemu...	100.0	[0..13]	[85..4]
gi\|99646736 - gi\|99646736\|emb\|CAK22422.1\| phytosulfokine-alpha peptide precursor [Beta vulgaris]	97.0	[0..13]	[85..4]
gi\|54310818 - gi\|54310818\|gb\|AAV33646.1\| phytosulfokine precursor [Avicennia marina]	95.0	[0..1]	[85..1]

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Predicted Domain #1

Region A:
Residues: [1-87]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMKTKSEVLI FFFTLVLLLS MASSVILRED GFAPPKPSPT THEKASTKGD RDGVECKNSD  60
   61 SEEECLVKKT VAAHTDYIYT QDLNLSP

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	31.0
Match:	PF06404.3
Description:	No description for PF06404.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits