YRC Public Data Repository - Protein Structure Prediction

Protein:	PSAN_ARATH
Organism:	Arabidopsis thaliana
Length:	171 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PSAN_ARATH.

Description	E-value	Query Range	Subject Range
gi\|28629385 - gi\|28629385\|gb\|AAO49652.1\| photosystem I-N subunit [Phaseolus vulgaris]	259.0	[0..1]	[171..1]
gi\|79332074 - gi\|79332074\|ref\|NP_001032133.1\| PSAN (photosystem I reaction center subunit PSI-N); calmodulin bindi...	237.0	[0..1]	[142..1]
gi\|92876000 - gi\|92876000\|gb\|ABE83768.1\| Photosystem I reaction centre subunit N [Medicago truncatula]	232.0	[0..1]	[171..1]
gi\|113648841, gi... - gi\|77553228\|gb\|ABA96024.1\| Photosystem I reaction centre subunit N, chloroplast precursor, putative,...	189.0	[0..23]	[171..4]
PSAN_MAIZE - Photosystem I reaction center subunit N, chloroplastic (Fragment) OS=Zea mays GN=PSAN PE=2 SV=1	181.0	[0..79]	[171..20]
gi\|19095 - gi\|19095\|emb\|CAA47056.1\| photosystem I subunit N [Hordeum vulgare subsp. vulgare] PSAN_HORVU - Photosystem I reaction center subunit N, chloroplastic OS=Hordeum vulgare GN=PSAN PE=2 SV=1	177.0	[0..23]	[171..4]
gi\|74272701 - gi\|74272701\|gb\|ABA01146.1\| chloroplast photosystem I subunit N [Chlamydomonas incerta]	174.0	[0..34]	[165..1]
gi\|37927472 - gi\|37927472\|gb\|AAP69817.1\| putative photosystem I reaction center subunit N precursor [Vitis vinifer...	171.0	[0..89]	[171..3]
gi\|12744797 - gi\|12744797\|gb\|AAK06774.1\|AF323725_1 PsaN precursor [Chlamydomonas reinhardtii]	161.0	[0..34]	[165..1]
gi\|5902586 - gi\|5902586\|gb\|AAD55563.1\|AF110781_1 photosystem I reaction center subunit PSAN precursor [Volvox car... PSAN_VOLCA - Photosystem I reaction center subunit N, chloroplastic OS=Volvox carteri GN=PSAN PE=2 SV=1	131.0	[0..88]	[165..55]

Back

Predicted Domain #1

Region A:
Residues: [1-83]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAMNSSVLT CSYAIAGSGS VELNQKVGLV NSSVGFGQKK QMIMPVIKAQ RVVGDDVDGS  60
   61 NGRRSAMVFL AATLFSTAAV SAS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.912	a.7.6	Ribosomal protein S20

Predicted Domain #2

Region A:
Residues: [84-171]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ANAGVIDEYL ERSKTNKELN DKKRLATSGA NFARAFTVQF GSCKFPENFT GCQDLAKQKK  60
   61 VPFISEDIAL ECEGKDKYKC GSNVFWKW

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	44.045757
Match:	2o01N
Description:	No description for 2o01N was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits