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View Structure Prediction Details

Protein: PRS6B_ARATH
Organism: Arabidopsis thaliana
Length: 408 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PRS6B_ARATH.

Description E-value Query
Range
Subject
Range
gi|37528354, gi|... - gi|37528354|ref|NP_931699.1| ATP-dependent metalloprotease [Photorhabdus luminescens subsp. laumondi...
339.0 [0..35] [402..33]

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Predicted Domain #1
Region A:
Residues: [1-408]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASAAVASMV LDPKASPALM DLSTADEEDL YGRLKSLERQ LEFTDIQEEY VKDEQKNLKR  60
   61 ELLRAQEEVK RIQSVPLVIG QFMEMVDQNN GIVGSTTGSN YYVRILSTIN RELLKPSASV 120
  121 ALHRHSNALV DVLPPEADSS ISLLSQSEKP DVSYNDIGGC DIQKQEIREA VELPLTHHEL 180
  181 YKQIGIDPPR GVLLYGPPGT GKTMLAKAVA NHTTAAFIRV VGSEFVQKYL GEGPRMVRDV 240
  241 FRLAKENAPA IIFIDEVDAI ATARFDAQTG ADREVQRILM ELLNQMDGFD QTVNVKVIMA 300
  301 TNRADTLDPA LLRPGRLDRK IEFPLPDRRQ KRLVFQVCTS KMNLSDEVDL EDYVSRPDKI 360
  361 SAAEIAAICQ EAGMHAVRKN RYVILPKDFE KGYRANVKKP DTDFEFYK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 72.30103
Match: 1oz4A
Description: VCP/p97
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle