YRC Public Data Repository - Protein Structure Prediction

Protein:	PCKA_ARATH
Organism:	Arabidopsis thaliana
Length:	671 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PCKA_ARATH.

Description	E-value	Query Range	Subject Range
gi\|13785471 - gi\|13785471\|dbj\|BAB43909.1\| phosphoenolpyruvate carboxykinase [Flaveria pringlei]	927.0	[0..8]	[671..2]
gi\|13785469 - gi\|13785469\|dbj\|BAB43908.1\| phosphoenolpyruvate carboxykinase [Flaveria trinervia]	926.0	[0..2]	[671..3]
gi\|115451989, gi... - gi\|215734813\|dbj\|BAG95535.1\| unnamed protein product [Oryza sativa Japonica Group], gi\|115451989\|ref...	919.0	[0..16]	[671..3]
gi\|22328084, gi\|... - gi\|22328084\|ref\|NP_680468.1\| PCK2 (PHOSPHOENOLPYRUVATE CARBOXYKINASE 2); ATP binding / phosphoenolpy...	891.0	[0..3]	[671..2]
gi\|16950587 - gi\|16950587\|gb\|AAG01894.2\| phosphoenolpyruvate carboxykinase [Lycopersicon esculentum]	891.0	[0..3]	[671..2]
gi\|58036453 - gi\|58036453\|dbj\|BAD88616.1\| phosphoenolpyruvate carboxykinase [Zoysia japonica]	887.0	[0..16]	[671..2]
PCKA_MAIZE - Phosphoenolpyruvate carboxykinase [ATP] OS=Zea mays PE=2 SV=1	883.0	[0..16]	[671..2]
gi\|33329363 - gi\|33329363\|gb\|AAQ10076.1\| phosphoenolpyruvate carboxykinase [Panicum maximum]	877.0	[0..16]	[671..2]

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Predicted Domain #1

Region A:
Residues: [1-131]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAGNGNATN GDGGFSFPKG PVMPKITTGA AKRGSGVCHD DSGPTVNATT IDELHSLQKK  60
   61 RSAPTTPINQ NAAAAFAAVS EEERQKIQLQ SISASLASLT RESGPKVVRG DPAEKKTDGS 120
  121 TTPAYAHGQH H

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.348	d.73.1	RuBisCO, small subunit

Predicted Domain #2

Region A:
Residues: [132-671]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SIFSPATGAV SDSSLKFTHV LYNLSPAELY EQAIKYEKGS FITSNGALAT LSGAKTGRAP  60
   61 RDKRVVRDAT TEDELWWGKG SPNIEMDEHT FMVNRERAVD YLNSLEKVFV NDQYLNWDPE 120
  121 NRIKVRIVSA RAYHSLFMHN MCIRPTQEEL ESFGTPDFTI YNAGQFPCNR YTHYMTSSTS 180
  181 VDLNLARREM VILGTQYAGE MKKGLFSVMH YLMPKRRILS LHSGCNMGKD GDVALFFGLS 240
  241 GTGKTTLSTD HNRYLIGDDE HCWTETGVSN IEGGCYAKCV DLSREKEPDI WNAIKFGTVL 300
  301 ENVVFDEHTR EVDYSDKSVT ENTRAAYPIE FIPNAKIPCV GPHPTNVILL ACDAFGVLPP 360
  361 VSKLNLAQTM YHFISGYTAL VAGTEDGIKE PTATFSACFG AAFIMLHPTK YAAMLAEKMK 420
  421 SQGATGWLVN TGWSGGSYGV GNRIKLAYTR KIIDAIHSGS LLKANYKKTE IFGFEIPTEI 480
  481 EGIPSEILDP VNSWSDKKAH KDTLVKLGGL FKKNFEVFAN HKIGVDGKLT EEILAAGPIF 540
  541

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1000.0
Match:	1aylA
Description:	PHOSPHOENOLPYRUVATE CARBOXYKINASE
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits