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View Structure Prediction Details

Protein: PMA11_ARATH
Organism: Arabidopsis thaliana
Length: 956 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PMA11_ARATH.

Description E-value Query
Range
Subject
Range
gi|113649889, gi... - gi|77556811|gb|ABA99607.1| Plasma membrane ATPase 1, putative, expressed [Oryza sativa (japonica cul...
857.0 [0..1] [956..1]

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Predicted Domain #1
Region A:
Residues: [1-890]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGDKEEVLEA VLKETVDLEN VPIEEVFESL RCSREGLTTE AADERLALFG HNKLEEKKES  60
   61 KFLKFLGFMW NPLSWVMEAA AIMAIALANG GGKPPDWQDF VGIITLLVIN STISFIEENN 120
  121 AGNAAAALMA RLAPKAKVLR DGRWGEQDAA ILVPGDIISI KLGDIVPADA RLLEGDPLKI 180
  181 DQSSLTGESL PVTKGPGDGV YSGSTCKQGE LEAVVIATGV HTFFGKAAHL VDTTNHVGHF 240
  241 QQVLTAIGNF CICSIAVGMI IEIVVMYPIQ HRAYRPGIDN LLVLLIGGIP IAMPTVLSVT 300
  301 MAIGSHRLSQ QGAITKRMTA IEEMAGMDVL CSDKTGTLTL NKLTVDKNLI EVFTKGVDAD 360
  361 TVVLMAAQAS RLENQDAIDA AIVGMLADPK EARAGVREVH FLPFNPTDKR TALTYIDSDG 420
  421 KMHRVSKGAP EQILNLAHNR AEIERRVHAV IDKFAERGLR SLAVAYQEVP EGTKESAGGP 480
  481 WQFMGLMPLF DPPRHDSAET IRRALNLGVN VKMITGDQLA IGKETGRRLG MGTNMYPSSA 540
  541 LLGQHKDESI GALPIDDLIE KADGFAGVFP EHKYEIVKRL QARKHICGMT GDGVNDAPAL 600
  601 KKADIGIAVA DATDAARSAS DIVLTEPGLS VIISAVLTSR AIFQRMKNYT IYAVSITIRI 660
  661 VLGFMLLALI WKFDFPPFMV LIIAILNDGT IMTISKDRVK PSPLPDSWKL SEIFATGVVF 720
  721 GSYMAMMTVI FFWAAYKTDF FPRTFGVSTL EKTAHDDFRK LASAIYLQVS IISQALIFVT 780
  781 RSRSWSYVER PGMLLVVAFI LAQLVATLIA VYANWSFAAI EGIGWGWAGV IWLYNIVFYI 840
  841 PLDIIKFLIR YALSGRAWDL VIEQRVAFTR QKDFGKEQRE LQWAHAQRTL 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 154.0
Match: 1mhsA
Description: Proton ATPase
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [891-956]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HGLQAPDAKM FPERTHFNEL SQMAEEAKRR AEIARLRELH TLKGHVESVV RLKGLDIETI  60
   61 QQAYTV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 19.0
Match: 2o98P
Description: No description for 2o98P was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle