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View Structure Prediction Details

Protein: PMA9_ARATH
Organism: Arabidopsis thaliana
Length: 954 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PMA9_ARATH.

Description E-value Query
Range
Subject
Range
gi|31580853 - gi|31580853|dbj|BAC77531.1| plasma membrane H+-ATPase [Sesbania rostrata]
874.0 [0..1] [954..1]

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Predicted Domain #1
Region A:
Residues: [1-893]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGNKDSSWD DIKNEGIDLE KIPIEEVLTQ LRCTREGLTS DEGQTRLEIF GPNKLEEKKE  60
   61 NKVLKFLGFM WNPLSWVMEL AAIMAIALAN GGGRPPDWQD FVGITVLLII NSTISFIEEN 120
  121 NAGNAAAALM AGLAPKTKVL RDGKWSEQEA AILVPGDIIS IKLGDIVPAD GRLLDGDPLK 180
  181 IDQSALTGES LPVTKHPGQE VYSGSTCKQG ELEAVVIATG VHTFFGKAAH LVDSTNQEGH 240
  241 FQKVLTAIGN FCICSIAIGM LIEIVVMYPI QKRAYRDGID NLLVLLIGGI PIAMPTVLSV 300
  301 TMAIGSHRLS QQGAITKRMT AIEEMAGMDV LCSDKTGTLT LNKLTVDKSM VEVFVKDLDK 360
  361 DQLLVNAARA SRVENQDAID ACIVGMLGDP REAREGITEV HFFPFNPVDK RTAITYIDAN 420
  421 GNWHRVSKGA PEQIIELCNL REDASKRAHD IIDKFADRGL RSLAVGRQTV SEKDKNSPGE 480
  481 PWQFLGLLPL FDPPRHDSAE TIRRALDLGV NVKMITGDQL AIGKETGRRL GMGTNMYPSS 540
  541 ALLGQDKDES IASLPVDELI EKADGFAGVF PEHKYEIVKR LQEMKHICGM TGDGVNDAPA 600
  601 LKRADIGIAV ADATDAARSA SDIVLTEPGL SVIVSAVLTS RAIFQRMKNY TIYAVSITIR 660
  661 IVMGFMLLAL IWKFDFSPFM VLIVAILNDG TIMTISKDRV KPSPLPDSWK LKEIFATGVV 720
  721 LGTYLAVMTV VFFWAAESTD FFSAKFGVRS ISGNPHELTA AVYLQVSIVS QALIFVTRSR 780
  781 SWSYVERPGF WLISAFFMAQ LIATLIAVYA NWNFARIRGI GWGWAGVIWL YSIVFYIPLD 840
  841 ILKFIIRYSL SGRAWDNVIE NKTAFTSKKD YGKGEREAQW AQAQRTLHGL QPA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 153.0
Match: 1mhsA
Description: Proton ATPase
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [894-954]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QTSDMFNDKS TYRELSEIAD QAKRRAEVAR LRERHTLKGH VESVVKQKGL DIEAIQQHYT  60
   61 L

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 19.30103
Match: 2o98P
Description: No description for 2o98P was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle