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View Structure Prediction Details

Protein: PLY22_ARATH
Organism: Arabidopsis thaliana
Length: 432 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PLY22_ARATH.

Description E-value Query
Range
Subject
Range
gi|10177299 - gi|10177299|dbj|BAB10560.1| pectate lyase [Arabidopsis thaliana]
474.0 [0..23] [432..1]

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Predicted Domain #1
Region A:
Residues: [1-89]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFRPNSLLIP SNLSTTKSQR NTMLNSSYLS FALIFFCCIL FSALASSLPV SDPELVVEEV  60
   61 HRKINESISR RKLGFFSCGS GNPIDDCWR

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [90-432]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 CDKDWEKNRK RLADCGIGFG KNAIGGRDGE IYVVTDPGND DPVNPRPGTL RYAVIQDEPL  60
   61 WIIFKRDMTI QLKEELIMNS FKTLDGRGAS VHISGGPCIT IQYVTNIIIH GLHIHDCKQG 120
  121 GNTYVRDSPE HYGYRTVSDG DGVSIFGGSH VWVDHCSLSN CNDGLIDAIR GSTAITISNN 180
  181 YLTHHNKVML LGHSDTYEQD KNMQVTIAFN HFGEGLVQRM PRCRHGYFHV VNNDYTHWEM 240
  241 YAIGGSANPT INSQGNRFLA PDDSSSKEVT KHEDAPEDEW RNWNWRSEGD LLLNGAFFTY 300
  301 SGAGPAKSSS YSKASSLAAR PSSHVGEITI ASGALSCKRG SHC

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 79.69897
Match: 1pxzA
Description: 1.7 Angstrom Crystal Structure of jun a 1, the major allergen from cedar pollen
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 0.142826098671881 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle