YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: PLY19_ARATH
Organism: Arabidopsis thaliana
Length: 472 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PLY19_ARATH.

Description E-value Query
Range
Subject
Range
gi|21536592 - gi|21536592|gb|AAM60924.1| putative pectate lyase [Arabidopsis thaliana]
472.0 [0..1] [472..1]

Back

Predicted Domain #1
Region A:
Residues: [1-107]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEMVRLSKLM FTFCIAVLIP TIRGNISELD EYWSQRADEA REFTLQAYHS DPYEIVDHFH  60
   61 ERHYDNSTDV TTPEEDGDAK PEEEEKEFIE MLGSSTNSTR RSLRGKG

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 51.537602
Match: PF04431.4
Description: No description for PF04431.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [108-472]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KGKWSKLKGP CTASNPIDKC WRCRSDWAKR RKKLTRCVRG FGHRTTGGKR GRIYVVTSNL  60
   61 DEDMVNPKPG TLRHAVIQKE PLWIIFKNDM SIRLNQELLI NSHKTIDARG ANVHVAHGAG 120
  121 ITMQFVKNVI IHGLHIHHIS ESSGGMIRDS VDHFGMRTRA DGDGLSIYGS SNIWLDHISM 180
  181 SKCQDGLIDA IVGSTGITIS NSHFTHHNDV MLLGAQNTNE ADKHMQVTVA YNHFGKGLVQ 240
  241 RMPRIRWGFV HVVNNDYTHW ELYAIGGSQG PTILSHGNRF IAPPHKPHYR EVTKRDYASE 300
  301 DEWKHWNWRS DKDVFMNGAY FRQSGNPQYK CAHTRQQMIK PKNGLAVSKL TKYAGALDCR 360
  361 VGRRC

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 77.0
Match: 1pxzA
Description: 1.7 Angstrom Crystal Structure of jun a 1, the major allergen from cedar pollen
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 0.142826098671881 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle