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View Structure Prediction Details

Protein: PIP27_ARATH
Organism: Arabidopsis thaliana
Length: 280 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PIP27_ARATH.

Description E-value Query
Range
Subject
Range
gi|2306917 - gi|2306917|gb|AAB65787.1| plasma membrane intrinsic protein [Arabidopsis thaliana]
298.0 [0..1] [280..1]

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Predicted Domain #1
Region A:
Residues: [1-280]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKEVSEEGK THHGKDYVDP PPAPLLDMGE LKSWSFYRAL IAEFIATLLF LYVTVATVIG  60
   61 HKKQTGPCDG VGLLGIAWAF GGMIFVLVYC TAGISGGHIN PAVTFGLFLA RKVSLVRALG 120
  121 YMIAQCLGAI CGVGFVKAFM KTPYNTLGGG ANTVADGYSK GTALGAEIIG TFVLVYTVFS 180
  181 ATDPKRSARD SHIPVLAPLP IGFAVFMVHL ATIPITGTGI NPARSFGAAV IYNNEKAWDD 240
  241 QWIFWVGPFL GALAAAAYHQ YILRASAIKA LGSFRSNATN 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 78.69897
Match: 2b5fA
Description: Crystal structure of the spinach aquaporin SoPIP2;1 in an open conformation to 3.9 resolution
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle