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View Structure Prediction Details

Protein: PIP12_ARATH
Organism: Arabidopsis thaliana
Length: 286 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PIP12_ARATH.

Description E-value Query
Range
Subject
Range
gi|116311126, gi... - gi|125549323|gb|EAY95145.1| hypothetical protein OsI_16963 [Oryza sativa Indica Group], gi|116311126...
PIP12_ORYSJ - Probable aquaporin PIP1-2 OS=Oryza sativa subsp. japonica GN=PIP1-2 PE=2 SV=3
330.0 [0..1] [286..1]

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Predicted Domain #1
Region A:
Residues: [1-286]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEGKEEDVRV GANKFPERQP IGTSAQSDKD YKEPPPAPLF EPGELASWSF WRAGIAEFIA  60
   61 TFLFLYITVL TVMGVKRSPN MCASVGIQGI AWAFGGMIFA LVYCTAGISG GHINPAVTFG 120
  121 LFLARKLSLT RAVYYIVMQC LGAICGAGVV KGFQPKQYQA LGGGANTIAH GYTKGSGLGA 180
  181 EIIGTFVLVY TVFSATDAKR NARDSHVPIL APLPIGFAVF LVHLATIPIT GTGINPARSL 240
  241 GAAIIFNKDN AWDDHWVFWV GPFIGAALAA LYHVIVIRAI PFKSRS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 75.39794
Match: 2b5fA
Description: Crystal structure of the spinach aquaporin SoPIP2;1 in an open conformation to 3.9 resolution
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle