YRC Public Data Repository - Protein Structure Prediction

Protein:	PHS2_ARATH
Organism:	Arabidopsis thaliana
Length:	841 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PHS2_ARATH.

Description	E-value	Query Range	Subject Range
gi\|15983803 - gi\|15983803\|gb\|AAL10498.1\| AT3g46970/F13I12_20 [Arabidopsis thaliana]	1126.0	[0..1]	[841..1]
gi\|114681358 - gi\|114681358\|ref\|XP_525293.2\| PREDICTED: brain glycogen phosphorylase [Pan troglodytes]	1102.0	[0..2]	[840..164]
gi\|109093168 - gi\|109093168\|ref\|XP_001100456.1\| PREDICTED: brain glycogen phosphorylase isoform 3 [Macaca mulatta]	1099.0	[0..4]	[840..2]
gi\|62087740 - gi\|62087740\|dbj\|BAD92317.1\| brain glycogen phosphorylase variant [Homo sapiens]	1096.0	[0..2]	[840..22]
gi\|50054411, gi\|... - gi\|50054411\|ref\|NP_001001904.1\| brain glycogen phosphorylase [Xenopus (Silurana) tropicalis], gi\|463...	1095.0	[0..6]	[841..4]
gi\|147898991, gi... - gi\|47940264\|gb\|AAH72163.1\| MGC80198 protein [Xenopus laevis], gi\|147898991\|ref\|NP_001085064.1\| hypot...	1095.0	[0..4]	[841..2]

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Predicted Domain #1

Region A:
Residues: [1-841]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANANGKAAT SLPEKISAKA NPEADDATEI AGNIVYHAKY SPHFSPLKFG PEQALYATAE  60
   61 SLRDRLIQLW NETYVHFNKV DPKQTYYLSM EYLQGRALTN AIGNLNLQGP YADALRTLGY 120
  121 ELEEIAEQEK DAALGNGGLG RLASCFLDSM ATLNLPAWGY GLRYRHGLFK QIITKKGQEE 180
  181 IPEDWLEKFS PWEIVRHDVV FPVRFFGKVQ VNPDGSRKWV DGDVVQALAY DVPIPGYGTK 240
  241 NTISLRLWEA KARAEDLDLF QFNEGEYELA AQLHSRAQQI CTVLYPGDAT ENGKLLRLKQ 300
  301 QFFLCSASLQ DIISRFHERS TTEGSRKWSE FPSKVAVQMN DTHPTLAIPE LMRLLMDDNG 360
  361 LGWDEAWDVT SKTVAYTNHT VLPEALEKWS QSLMWKLLPR HMEIIEEIDK RFVQTIRDTR 420
  421 VDLEDKISSL SILDNNPQKP VVRMANLCVV SSHTVNGVAQ LHSDILKAEL FADYVSIWPN 480
  481 KFQNKTNGIT PRRWLRFCSP ELSDIITKWL KTDKWITDLD LLTGLRQFAD NEELQSEWAS 540
  541 AKTANKKRLA QYIERVTGVS IDPTSLFDIQ VKRIHEYKRQ LMNILGVVYR FKKLKEMKPE 600
  601 ERKKTVPRTV MIGGKAFATY TNAKRIVKLV NDVGDVVNSD PEVNEYLKVV FVPNYNVTVA 660
  661 EMLIPGSELS QHISTAGMEA SGTSNMKFAL NGCLIIGTLD GANVEIREEV GEENFFLFGA 720
  721 TADQVPRLRK EREDGLFKPD PRFEEAKQFV KSGVFGSYDY GPLLDSLEGN TGFGRGDYFL 780
  781 VGYDFPSYMD AQAKVDEAYK DRKGWLKMSI LSTAGSGKFS SDRTIAQYAK EIWNIEACPV 840
  841 P

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1000.0
Match:	1z8dA
Description:	No description for 1z8dA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits