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View Structure Prediction Details

Protein: PLY9_ARATH
Organism: Arabidopsis thaliana
Length: 452 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PLY9_ARATH.

Description E-value Query
Range
Subject
Range
PLY15_ARATH - Probable pectate lyase 15 OS=Arabidopsis thaliana GN=At4g13710 PE=2 SV=1
436.0 [0..30] [451..46]

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Predicted Domain #1
Region A:
Residues: [1-101]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATSSLKLTS ACFVLLFIFV GCVLTATNLR NNEISRSRKL KTEDSKSFNS SPMTTRLDGV  60
   61 VELNEHAVTD PDKVAHEVSN LIHMSEQNIT ARRKLGFFSC G

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [102-452]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NGNLIDDCWR CDRNWNKNRK HLADCGMGFG SKAFGGRNGS YYVVTDHSDD DVVNPKPGTL  60
   61 RHAVIQVEPL WIIFKRDMVI KLKQELIMNS FKTIDARGAN VHIANGACIT IQNITNVIVH 120
  121 GLHIHDCKRT GNVTVRSSPS QAGFRGTADG DAINIFGSSH IWIDHNSLSN CTDGLVDVVN 180
  181 GSTAITISNN HFTHHDEVML LGHNDSYTRD KMMQVTVAYN HFGEGLIQRM PRCRHGYFHV 240
  241 VNNDYTHWKM YAIGGSANPT INSQGNRFAA PKNHSAKEVT KRLDTKGNEW MEWNWRSEKD 300
  301 LLVNGAFFTP SGEGASGDSQ TLSLPAKPAS MVDAITASAG ALSCRRGKPC Y

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 70.39794
Match: 1pxzA
Description: 1.7 Angstrom Crystal Structure of jun a 1, the major allergen from cedar pollen
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 0.142826098671881 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle