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View Structure Prediction Details

Protein: PER56_ARATH
Organism: Arabidopsis thaliana
Length: 329 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PER56_ARATH.

Description E-value Query
Range
Subject
Range
gi|2117621, gi|9... - gi|971560|emb|CAA62226.1| peroxidase1B [Medicago sativa], pir||JC4780 peroxidase (EC 1.11.1.7) 1B pr...
380.0 [0..4] [329..1]

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Predicted Domain #1
Region A:
Residues: [1-329]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAALKMTISC FLFLQVIYCL LSSFAPTNVQ GLKVGFYDKA CPKAELIVKK SVFEAVKNDR  60
   61 TIAAPLLRMF FHDCFVRGCE GSVLLELKNK KDEKNSIPNL TLRGFEIIDN VKAALEKECP 120
  121 GIVSCSDVLA LVARDAMVAL NGPSWEVETG RRDGLVTNIT EALLNLPSPF NNISSLITQF 180
  181 QSKGLDKKDL VVLSGGHTIG NGHCPQITNR LYNFTGKGDS DPNLDTEYAV KLRGKCKPTD 240
  241 TTTALEMDPG SFKTFDESYF KLVSQRRGLF QSDAALLDNQ ETKSYVLKSL NSDGSTFFKD 300
  301 FGVSMVKMGR IGVLTGQVGE VRKKCRMVN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 96.522879
Match: 1pa2A
Description: Plant peroxidase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 0.426850936668086 bayes_pls_golite062009
oxidoreductase activity 0.10399831600382 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle