| Protein: | PLDZ1_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 1096 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PLDZ1_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
964.0 | [0..32] | [1096..43] |
|
Region A: Residues: [1-211] |
1 11 21 31 41 51
| | | | | |
1 MASEQLMSPA SGGGRYFQMQ PEQFPSMVSS LFSFAPAPTQ ETNRIFEELP KAVIVSVSRP 60
61 DAGDISPVLL SYTIECQYKQ FKWQLVKKAS QVFYLHFALK KRAFIEEIHE KQEQVKEWLQ 120
121 NLGIGDHPPV VQDEDADEVP LHQDESAKNR DVPSSAALPV IRPLGRQQSI SVRGKHAMQE 180
181 YLNHFLGNLD IVNSREVCRF LEVSMLSFSP E
|
| Detection Method: |  |
| Confidence: | 2.27 |
| Match: | 1ocsA |
| Description: | Crystal structure of the yeast PX-doamin protein Grd19p (sorting nexin3) complexed to phosphatidylinosytol-3-phosphate. |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.236280742130873 | bayes_pls_golite062009 |
|
Region A: Residues: [212-275] |
1 11 21 31 41 51
| | | | | |
1 YGPKLKEDYI MVKHLPKFSK SDDDSNRCCG CCWFCCCNDN WQKVWGVLKP GFLALLEDPF 60
61 DAKL
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [276-667] |
1 11 21 31 41 51
| | | | | |
1 LDIIVFDVLP VSNGNDGVDI SLAVELKDHN PLRHAFKVTS GNRSIRIRAK NSAKVKDWVA 60
61 SINDAALRPP EGWCHPHRFG SYAPPRGLTD DGSQAQWFVD GGAAFAAIAA AIENAKSEIF 120
121 ICGWWVCPEL YLRRPFDPHT SSRLDNLLEN KAKQGVQIYI LIYKEVALAL KINSVYSKRR 180
181 LLGIHENVRV LRYPDHFSSG VYLWSHHEKL VIVDNQVCFI GGLDLCFGRY DTFEHKVGDN 240
241 PSVTWPGKDY YNPRESEPNT WEDALKDELE RKKHPRMPWH DVHCALWGPP CRDVARHFVQ 300
301 RWNYAKRNKA PYEDSIPLLM PQHHMVIPHY MGRQEESDIE SKKEEDSIRG IRRDDSFSSR 360
361 SSLQDIPLLL PHEPVDQDGS SGGHKENGTN NR
|
| Detection Method: | |
| Confidence: | 22.522879 |
| Match: | 1f0iA |
| Description: | Phospholipase D |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| catalytic activity | 0.762303478549781 | bayes_pls_golite062009 |
|
Region A: Residues: [668-969] |
1 11 21 31 41 51
| | | | | |
1 NGPFSFRKSK IEPVDGDTPM RGFVDDRNGL DLPVAKRGSN AIDSEWWETQ DHDYQVGSPD 60
61 ETGQVGPRTS CRCQIIRSVS QWSAGTSQVE ESIHSAYRSL IDKAEHFIYI ENQFFISGLS 120
121 GDDTVKNRVL EALYKRILRA HNEKKIFRVV VVIPLLPGFQ GGIDDSGAAS VRAIMHWQYR 180
181 TIYRGHNSIL TNLYNTIGVK AHDYISFYGL RAYGKLSEDG PVATSQVYVH SKIMIVDDRA 240
241 ALIGSANIND RSLLGSRDSE IGVLIEDTEL VDSRMAGKPW KAGKFSSSLR LSLWSEHLGL 300
301 RT
|
| Detection Method: | |
| Confidence: | 4.41 |
| Match: | 1v0rA |
| Description: | Tungstate-inhibited phospholipase D from Streptomyces sp. strain PMF. |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| catalytic activity | 0.674770578390245 | bayes_pls_golite062009 |
|
Region A: Residues: [970-1096] |
1 11 21 31 41 51
| | | | | |
1 GEIDQIIDPV SDSTYKEIWM ATAKTNTMIY QDVFSCVPND LIHSRMAFRQ SLSYWKEKLG 60
61 HTTIDLGIAP EKLESYHNGD IKRSDPMDRL KAIKGHLVSF PLDFMCKEDL RPVFNESEYY 120
121 ASPQVFH
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
