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View Structure Prediction Details

Protein: PBS1_ARATH
Organism: Arabidopsis thaliana
Length: 456 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PBS1_ARATH.

Description E-value Query
Range
Subject
Range
gi|113536474, gi... - gi|50908931|ref|XP_465954.1| putative protein serine/threonine kinase [Oryza sativa (japonica cultiv...
349.0 [0..1] [455..1]

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Predicted Domain #1
Region A:
Residues: [1-375]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGCFSCFDSS DDEKLNPVDE SNHGQKKQSQ PTVSNNISGL PSGGEKLSSK TNGGSKRELL  60
   61 LPRDGLGQIA AHTFAFRELA AATMNFHPDT FLGEGGFGRV YKGRLDSTGQ VVAVKQLDRN 120
  121 GLQGNREFLV EVLMLSLLHH PNLVNLIGYC ADGDQRLLVY EFMPLGSLED HLHDLPPDKE 180
  181 ALDWNMRMKI AAGAAKGLEF LHDKANPPVI YRDFKSSNIL LDEGFHPKLS DFGLAKLGPT 240
  241 GDKSHVSTRV MGTYGYCAPE YAMTGQLTVK SDVYSFGVVF LELITGRKAI DSEMPHGEQN 300
  301 LVAWARPLFN DRRKFIKLAD PRLKGRFPTR ALYQALAVAS MCIQEQAATR PLIADVVTAL 360
  361 SYLANQAYDP SKDDS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 71.0
Match: 2qkwB
Description: No description for 2qkwB was found.

Predicted Domain #2
Region A:
Residues: [376-456]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RRNRDERGAR LITRNDDGGG SGSKFDLEGS EKEDSPRETA RILNRDINRE RAVAEAKMWG  60
   61 ESLREKRRQS EQGTSESNST G

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle