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View Structure Prediction Details

Protein: OXA1L_ARATH
Organism: Arabidopsis thaliana
Length: 431 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for OXA1L_ARATH.

Description E-value Query
Range
Subject
Range
YIDC_SALCH - Membrane protein insertase YidC OS=Salmonella choleraesuis (strain SC-B67) GN=yidC PE=3 SV=1
OXAA_SALCH - Inner membrane protein oxaA OS=Salmonella choleraesuis GN=oxaA PE=3 SV=1
OXAA_SALCH, YIDC... - Membrane protein insertase YidC OS=Salmonella choleraesuis GN=yidC PE=3 SV=1, Inner membrane protein...
359.0 [0..10] [362..206]

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Predicted Domain #1
Region A:
Residues: [1-131]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATCLRGITK RVNLLQRRVY PSCGHLIRDD RDETKSGSSD TMIREVLARN GTNKLSSMFA  60
   61 DRHYQSFATG PLGLGLSSCR HMSSTPPEWS DKVDGIDFVA TEVVPDEIIE AVTTTSQAVV 120
  121 PAINEVAIAA A

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [132-431]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DSAFPVAALQ HLIDAVHSFT GLNWWASIAL TTVLIRGVTI PILLNQLKAT YKLNVLRPQL  60
   61 EELRQEMSTK AQDPEAMAEG QRRMQLLFKE HGVTPFTPLK GLIIQGPIFI SFFFAIRNMA 120
  121 EKVPSFKTGG TLWFTDLTTT DTTYILPLLT AVTFLIMVES NMQEGLEGNP VAGTMKKFSR 180
  181 IIAFLSIPVL IGIEKALFCY WLTSNLFTLV YGLTLRRPDV RKLLNLPDVV NSSTRQPSPS 240
  241 SPLPFSFAEP KDQSVVAQEK PPMSSESSSS VPDRRISRSS VLNQRIRTLE RQLKDRKIKK 300
  301 

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 12.431798
Match: PF02096.11
Description: No description for PF02096.11 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle