YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: NDUS7_ARATH
Organism: Arabidopsis thaliana
Length: 218 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NDUS7_ARATH.

Description E-value Query
Range
Subject
Range
NDUS7_BRAOL - NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial OS=Brassica oleracea PE=2 SV=1
266.0 [0..1] [218..1]

Back

Predicted Domain #1
Region A:
Residues: [1-218]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAMITRNTAT RLPLLLQSQR AVAAASVSHL HTSLPALSPS TSPTSYTRPG PPSTSPPPPG  60
   61 LSKAAEFVIS KVDDLMNWAR TGSIWPMTFG LACCAVEMMH TGAARYDLDR FGIIFRPSPR 120
  121 QSDCMIVAGT LTNKMAPALR KVYDQMPEPR WVISMGSCAN GGGYYHYSYS VVRGCDRIVP 180
  181 VDIYVPGCPP TAEALLYGLL QLQKKINRRK DFLHWWNK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 46.69897
Match: 2fug6
Description: Crystal structure of the hydrophilic domain of respiratory complex I from Thermus thermophilus
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
NADH dehydrogenase activity 8.51053947213617 bayes_pls_golite062009
NADH dehydrogenase (quinone) activity 8.23186758136463 bayes_pls_golite062009
NADH dehydrogenase (ubiquinone) activity 8.21026941773752 bayes_pls_golite062009
oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor 7.77242518640202 bayes_pls_golite062009
oxidoreductase activity, acting on NADH or NADPH 6.95515719312836 bayes_pls_golite062009
oxidoreductase activity 3.8029449016825 bayes_pls_golite062009
catalytic activity 1.41356903593784 bayes_pls_golite062009
binding 1.15717679472768 bayes_pls_golite062009
protein binding 0.403035218757706 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle