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View Structure Prediction Details

Protein: NDUA5_ARATH
Organism: Arabidopsis thaliana
Length: 169 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NDUA5_ARATH.

Description E-value Query
Range
Subject
Range
gi|16930745 - gi|16930745|gb|AAL32032.1|AF439273_1 NADH-ubiquinone oxidoreductase [Retama raetam]
245.0 [0..15] [166..1]

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Predicted Domain #1
Region A:
Residues: [1-81]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFLRAIGRPL LAKVKQTTGI VGLDVVPNAR AVLIDLYSKT LKEIQAVPED EGYRKAVESF  60
   61 TRQRLNVCKE EEDWEMIEKR L

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 35.585027
Match: PF04716.5
Description: No description for PF04716.5 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.886 N/A N/A a.51.1 Cytochrome c oxidase subunit h

Predicted Domain #2
Region A:
Residues: [82-169]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GCGQVEELIE EARDELTLIG KMIEWDPWGV PDDYECEVIE NDAPIPKHVP QHRPGPLPEQ  60
   61 FYKTLEGLIA ESKTEIPAAT PSDPQLKE

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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