YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: NTF2_ARATH
Organism: Arabidopsis thaliana
Length: 126 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NTF2_ARATH.

Description E-value Query
Range
Subject
Range
gi|21555203 - gi|21555203|gb|AAM63803.1| nuclear transport factor 2, putative [Arabidopsis thaliana]
175.0 [0..4] [126..1]

Back

Predicted Domain #1
Region A:
Residues: [1-126]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQMDPDAVS KAFVEHYYST FDTNRVGLAG LYQEASMLTF EGQKIQGVQS IVAKLTSLPF  60
   61 QQCKHHISTV DCQPSGPASG MLVFVSGNLQ LAGEEHALKF SQMFHLMPTP QGSFYVFNDI 120
  121 FRLNYA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 40.0
Match: 1a2kA
Description: Nuclear transport factor-2 (NTF2)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
protein transporter activity 3.2858716221712 bayes_pls_golite062009
nucleocytoplasmic transporter activity 2.57260151088345 bayes_pls_golite062009
binding 2.32562999055027 bayes_pls_golite062009
protein transmembrane transporter activity 2.22367856601071 bayes_pls_golite062009
transporter activity 1.80701285041353 bayes_pls_golite062009
substrate-specific transporter activity 1.33804818542017 bayes_pls_golite062009
structural constituent of nuclear pore 1.30758304562723 bayes_pls_golite062009
protein binding 1.24260899146543 bayes_pls_golite062009
transmembrane transporter activity 1.22102896992563 bayes_pls_golite062009
Ran GTPase binding 1.18290069522408 bayes_pls_golite062009
RNA binding 1.05240446104847 bayes_pls_golite062009
substrate-specific transmembrane transporter activity 0.890150150408175 bayes_pls_golite062009
P-P-bond-hydrolysis-driven protein transmembrane transporter activity 0.79772386064313 bayes_pls_golite062009
macromolecule transmembrane transporter activity 0.79772386064313 bayes_pls_golite062009
nucleic acid binding 0.688410645367506 bayes_pls_golite062009
primary active transmembrane transporter activity 0.446562877324676 bayes_pls_golite062009
P-P-bond-hydrolysis-driven transmembrane transporter activity 0.439519001457896 bayes_pls_golite062009
active transmembrane transporter activity 0.430285640125175 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle