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View Structure Prediction Details

Protein: NRL4_ARATH
Organism: Arabidopsis thaliana
Length: 355 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NRL4_ARATH.

Description E-value Query
Range
Subject
Range
gi|21593970 - gi|21593970|gb|AAM65906.1| Nitrilase 4 (sp P46011) [Arabidopsis thaliana]
311.0 [0..10] [355..1]

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Predicted Domain #1
Region A:
Residues: [1-355]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSMQQETSHM TAAPQTNGHQ IFPEIDMSAG DSSSIVRATV VQASTVFYDT PATLDKAERL  60
   61 LSEAAENGSQ LVVFPEAFIG GYPRGSTFEL AIGSRTAKGR DDFRKYHASA IDVPGPEVER 120
  121 LALMAKKYKV YLVMGVIERE GYTLYCTVLF FDSQGLFLGK HRKLMPTALE RCIWGFGDGS 180
  181 TIPVFDTPIG KIGAAICWEN RMPSLRTAMY AKGIEIYCAP TADSRETWLA SMTHIALEGG 240
  241 CFVLSANQFC RRKDYPSPPE YMFSGSEESL TPDSVVCAGG SSIISPLGIV LAGPNYRGEA 300
  301 LITADLDLGD IARAKFDFDV VGHYSRPEVF SLNIREHPRK AVSFKTSKVM EDESV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 55.522879
Match: 1emsA
Description: NIT-FHIT fusion protein, C-terminal domain; NIT-FHIT fusion protein, N-terminal domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds 2.08563993959019 bayes_pls_golite062009
catalytic activity 1.64442398754697 bayes_pls_golite062009
binding 1.58491015879508 bayes_pls_golite062009
protein binding 0.276768866737717 bayes_pls_golite062009
hydrolase activity 0.056614713418243 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle