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View Structure Prediction Details

Protein: NIP51_ARATH
Organism: Arabidopsis thaliana
Length: 304 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NIP51_ARATH.

Description E-value Query
Range
Subject
Range
gi|116311126, gi... - gi|125549323|gb|EAY95145.1| hypothetical protein OsI_16963 [Oryza sativa Indica Group], gi|116311126...
PIP12_ORYSJ - Probable aquaporin PIP1-2 OS=Oryza sativa subsp. japonica GN=PIP1-2 PE=2 SV=3
246.0 [0..20] [289..12]

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Predicted Domain #1
Region A:
Residues: [1-304]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPPEAEVGA VMVMAPPTPG TPGTPGGPLI TGMRVDSMSF DHRKPTPRCK CLPVMGSTWG  60
   61 QHDTCFTDFP SPDVSLTRKL GAEFVGTFIL IFTATAGPIV NQKYDGAETL IGNAACAGLA 120
  121 VMIIILSTGH ISGAHLNPSL TIAFAALRHF PWAHVPAYIA AQVSASICAS FALKGVFHPF 180
  181 MSGGVTIPSV SLGQAFALEF IITFILLFVV TAVATDTRAV GELAGIAVGA TVMLNILVAG 240
  241 PSTGGSMNPV RTLGPAVASG NYRSLWVYLV APTLGAISGA AVYTGVKLND SVTDPPRPVR 300
  301 SFRR

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Detection Method: PSI-BLAST
Confidence: 58.221849
Match: 2b5fA
Description: Crystal structure of the spinach aquaporin SoPIP2;1 in an open conformation to 3.9 resolution
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle