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View Structure Prediction Details

Protein: NAS4_ARATH
Organism: Arabidopsis thaliana
Length: 324 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NAS4_ARATH.

Description E-value Query
Range
Subject
Range
gi|27528464 - gi|27528464|emb|CAC82913.1| nicotianamine synthase [Thlaspi caerulescens]
267.0 [0..1] [324..1]

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Predicted Domain #1
Region A:
Residues: [1-324]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGYCQDDQLV NKICDLYEKI SKLETLKPCE DVDTLFKQLV STCIPPNPNI DVTKMSENIQ  60
   61 EMRSNLIKIC GEAEGYLEHH FSSILTSFED NPLHHLNLFP YYNNYLKLSK LEFDLLEQNL 120
  121 NGFVPRTVAF IGSGPLPLTS VVLASSHLKD SIFHNFDIDP SANMVAARLV SSDPDLSQRM 180
  181 FFHTVDIMDV TESLKGFDVV FLAALVGMDK KEKVKVVEHL EKHMSPGALL MLRSAHGPRA 240
  241 FLYPIVEPCD LEGFEVLSVY HPTDEVINSI VISRKLGEDA NGVVHDHIDQ ASDLACNCSK 300
  301 IHVIMNKKKS IIEEFAGANE EQLT

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 13.0
Match: 1kp9A
Description: CmaA1
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 0.723277178398499 bayes_pls_golite062009
transferase activity 0.64512166557639 bayes_pls_golite062009
transferase activity, transferring one-carbon groups 0.54403439349476 bayes_pls_golite062009
methyltransferase activity 0.54389223881989 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle