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View Structure Prediction Details

Protein: NAS1_ARATH
Organism: Arabidopsis thaliana
Length: 320 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NAS1_ARATH.

Description E-value Query
Range
Subject
Range
gi|4220612 - gi|4220612|dbj|BAA74589.1| nicotianamine synthase [Arabidopsis thaliana]
342.0 [0..1] [320..1]
gi|27528464 - gi|27528464|emb|CAC82913.1| nicotianamine synthase [Thlaspi caerulescens]
310.0 [0..1] [320..1]
gi|40782199 - gi|40782199|emb|CAE45015.1| putative nicotianamine synthase [Arabidopsis halleri subsp. halleri]
308.0 [0..1] [320..1]
gi|4894910 - gi|4894910|gb|AAD32650.1|AF136941_1 nicotianamine synthase 1 [Hordeum vulgare]
NAS8_HORVU - Nicotianamine synthase 8 OS=Hordeum vulgare GN=NAS8 PE=1 SV=1
293.0 [0..1] [320..1]
gi|19911064, gi|... - gi|19911064|dbj|BAB87846.1| ZmNAS1 [Zea mays], gi|162458224|ref|NP_001105504.1| NAS1 protein [Zea ma...
292.0 [0..1] [312..1]

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Predicted Domain #1
Region A:
Residues: [1-245]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MACQNNLVVK QIIDLYDQIS KLKSLKPSKN VDTLFGQLVS TCLPTDTNID VTNMCEEVKD  60
   61 MRANLIKLCG EAEGYLEQHF STILGSLQED QNPLDHLHIF PYYSNYLKLG KLEFDLLSQH 120
  121 SSHVPTKIAF VGSGPMPLTS IVLAKFHLPN TTFHNFDIDS HANTLASNLV SRDPDLSKRM 180
  181 IFHTTDVLNA TEGLDQYDVV FLAALVGMDK ESKVKAIEHL EKHMAPGAVL MLRSAHALRA 240
  241 FLYPI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 9.0
Match: 1sqfA
Description: The crystal structure of E. coli Fmu binary complex with S-Adenosylmethionine at 2.1 A resolution
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [246-320]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VDSSDLKGFQ LLTIYHPTDD VVNSVVIARK LGGPTTPGVN GTRGCMFMPC NCSKIHAIMN  60
   61 NRGKKNMIEE FSAIE

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle