YRC Public Data Repository - Protein Structure Prediction

Protein:	MT2A_ARATH
Organism:	Arabidopsis thaliana
Length:	81 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MT2A_ARATH.

Description	E-value	Query Range	Subject Range
gi\|62733239 - gi\|62733239\|gb\|AAX95356.1\| F22G5.1-related [Oryza sativa (japonica cultivar-group)]	87.0	[0..24]	[80..609]
gi\|33111957 - gi\|33111957\|emb\|CAE12162.1\| metallothionein-like protein [Quercus robur]	84.0	[0..1]	[81..22]
gi\|14329788 - gi\|14329788\|emb\|CAC40742.1\| methallothioneine-like protein [Atropa belladonna]	78.0	[0..1]	[80..1]
MT23_BRAJU - Metallothionein-like protein type 2, MT2-22 OS=Brassica juncea PE=3 SV=1	77.0	[0..24]	[81..23]
gi\|1480016 - gi\|1480016\|dbj\|BAA11391.1\| metallothionein-like protein [Brassica rapa]	74.0	[0..1]	[81..1]
gi\|16184, gi\|721... - pir\|\|SMMUL metallothionein-like protein - Arabidopsis thaliana, gi\|217857\|dbj\|BAA01990.1\| metallothi...	72.0	[0..25]	[81..25]
gi\|110270308, gi... - gi\|71040685\|gb\|AAZ20291.1\| metallothionein-like protein [Arachis hypogaea], gi\|110270308\|gb\|ABG57064...	71.0	[0..25]	[81..26]
MT1_PEA - Metallothionein-like protein 1 OS=Pisum sativum GN=MTA PE=3 SV=1	69.0	[0..7]	[81..3]
MT2_BRARA - Metallothionein-like protein type 2 OS=Brassica rapa PE=3 SV=1 MT22_BRAJU - Metallothionein-like protein type 2, MT2-18 OS=Brassica juncea PE=3 SV=1 MT2_BRACM - Metallothionein-like protein type 2 OS=Brassica campestris PE=3 SV=1	69.0	[0..25]	[81..25]

Back

Predicted Domain #1

Region A:
Residues: [1-81]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSCCGGNCGC GSGCKCGNGC GGCKMYPDLG FSGETTTTET FVLGVAPAMK NQYEASGESN  60
   61 NAENDACKCG SDCKCDPCTC K

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	42.327902
Match:	PF01439.9
Description:	No description for PF01439.9 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits