YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: MLO4_ARATH
Organism: Arabidopsis thaliana
Length: 573 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MLO4_ARATH.

Description E-value Query
Range
Subject
Range
gi|33942041, gi|... - gi|33942041|gb|AAQ55273.1| At1g11000 [Arabidopsis thaliana], gi|110736290|dbj|BAF00115.1| membrane p...
787.0 [0..1] [573..1]
gi|14718604 - gi|14718604|gb|AAK72963.1|AF388195_1 Mlo [Oryza sativa]
740.0 [0..1] [513..1]
gi|108705991, gi... - gi|6063540|dbj|BAA85400.1| unnamed protein product [Oryza sativa Japonica Group], gi|50948903|ref|XP...
739.0 [0..1] [513..1]
gi|44458502, gi|... - gi|44458502|gb|AAK38337.2| seven transmembrane protein Mlo1 [Zea mays], gi|194694044|gb|ACF81106.1| ...
734.0 [0..1] [523..1]
gi|60617257 - gi|60617257|gb|AAX31277.1| MLO1 [Capsicum annuum]
725.0 [0..1] [528..1]
gi|14334167 - gi|14334167|gb|AAK60566.1|AF384144_1 MLo protein [Triticum aestivum]
724.0 [0..8] [513..10]

Back

Predicted Domain #1
Region A:
Residues: [1-52]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEHMMKEGRS LAETPTYSVA SVVTVLVFVC FLVERAIYRF GKWLKKTRRK AL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [53-124]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FTSLEKMKEE LMLLGLISLL LSQSARWISE ICVNSSLFNS KFYICSEEDY GIHKKVLLEH  60
   61 TSSTNQSSLP HH

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.573 a.217.1 Description not found.
View Download 0.529 a.4.5 "Winged helix" DNA-binding domain
View Download 0.486 a.4.5 "Winged helix" DNA-binding domain
View Download 0.451 a.4.5 "Winged helix" DNA-binding domain
View Download 0.424 a.4.5 "Winged helix" DNA-binding domain
View Download 0.318 a.4.6 C-terminal effector domain of the bipartite response regulators
View Download 0.288 d.42.1 POZ domain
View Download 0.254 a.4.5 "Winged helix" DNA-binding domain
View Download 0.237 a.46.2 Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain

Predicted Domain #3
Region A:
Residues: [125-251]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GIHEASHQCG HGREPFVSYE GLEQLLRFLF VLGITHVLYS GIAIGLAMSK IYSWRKWEAQ  60
   61 AIIMAESDIH AKKTKVMKRQ STFVFHHASH PWSNNRFLIW MLCFLRQFRG SIRKSDYFAL 120
  121 RLGFLTK

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.762 N/A N/A a.24.20 Description not found.
View Download 0.735 N/A N/A a.8.9 Description not found.
View Download 0.735 N/A N/A a.8.9 Description not found.
View Download 0.727 N/A N/A a.8.9 Description not found.
View Download 0.701 N/A N/A a.121.1 Tetracyclin repressor-like, C-terminal domain
View Download 0.615 N/A N/A a.118.8 TPR-like
View Download 0.570 N/A N/A f.17.1 F1F0 ATP synthase subunit C
View Download 0.559 N/A N/A c.9.1 Barstar (barnase inhibitor)
View Download 0.558 N/A N/A a.29.2 Bromodomain
View Download 0.513 N/A N/A c.102.1 Cell-division inhibitor MinC, N-terminal domain
View Download 0.464 N/A N/A a.163.1 Crustacean CHH/MIH/GIH neurohormone
View Download 0.363 N/A N/A a.278.1 Description not found.
View Download 0.323 N/A N/A a.59.1 PAH2 domain
View Download 0.309 N/A N/A d.52.8 Description not found.
View Download 0.289 N/A N/A a.74.1 Cyclin-like

Predicted Domain #4
Region A:
Residues: [252-477]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HNLPFTYNFH MYMVRTMEDE FHGIVGISWP LWVYAIVCIC INVHGLNMYF WISFVPAILV  60
   61 MLVGTKLEHV VSKLALEVKE QQTGTSNGAQ VKPRDGLFWF GKPEILLRLI QFIIFQNAFE 120
  121 MATFIWFLWG IKERSCFMKN HVMISSRLIS GVLVQFWCSY GTVPLNVIVT QMGSRHKKAV 180
  181 IAESVRDSLH SWCKRVKERS KHTRSVCSLD TATIDERDEM TVGTLS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [478-573]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RSSSMTSLNQ ITINSIDQAE SIFGAAASSS SPQDGYTSRV EEYLSETYNN IGSIPPLNDE  60
   61 IEIEIEGEED NGGRGSGSDE NNGDAGETLL ELFRRT

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.936 a.24.28 Description not found.
View Download 0.842 a.24.10 Histidine-containing phosphotransfer domain, HPT domain
View Download 0.829 a.59.1 PAH2 domain
View Download 0.740 a.181.1 Antibiotic binding domain of TipA-like multidrug resistance regulators
View Download 0.740 a.181.1 Antibiotic binding domain of TipA-like multidrug resistance regulators
View Download 0.722 a.118.9 ENTH/VHS domain
View Download 0.722 a.118.9 ENTH/VHS domain
View Download 0.689 a.59.1 PAH2 domain
View Download 0.681 a.24.13 Domain of the SRP/SRP receptor G-proteins
View Download 0.668 a.24.17 Group V grass pollen allergen


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle