YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: M1280_ARATH
Organism: Arabidopsis thaliana
Length: 291 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for M1280_ARATH.

Description E-value Query
Range
Subject
Range
gi|20198279, gi|... - gi|20198279|gb|AAM15495.1| hypothetical protein [Arabidopsis thaliana], gi|15226090|ref|NP_178786.1|...
349.0 [0..1] [291..1]

Back

Predicted Domain #1
Region A:
Residues: [1-291]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIVLKWLFLT ISPCDAAEPW QLGSQDAATP IMQGIIDLHH DIFFFLILIL VFVLWILVRA  60
   61 LWHFHYKKNA IPQRIVHGTT IEILRTIFPC FISIFIVEPS FALALDDAAE ALFPNTAPTP 120
  121 SNTSSSEDSF GLRVLSEPWP ITRNLGLESS ICNRIRLLEA ANSPFLLGKE KGQYWGEIQE 180
  181 CLYNVSEQRE YYRLLDFENR DLQIRERKHS CLEVFRGVLL RNPYLEERAA YSPQEAFFDF 240
  241 LNERRDALDI SNPGSSPAEM DRLEILFLGE IERDLLRRGD ESLYIKQLLG D

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 48.154902
Match: 1occB
Description: Cytochrome c oxidase; Mitochondrial cytochrome c oxidase, subunit II
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle